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How to install AFNI
How to install cdm?How to install acunetix?How to install SCilab?How to install Winusb?How to install Eldy?sqlplus: error while loading shared libraries: libsqlplus.so: cannot open shared object file: No such file or directoryHow to install Abaqus?I just recently installed Ubuntu 14.04 and I can't seem to download anythingError running make to build Sage on Ubuntu 16.04How to install tuxcut?
0
These are the instructions given to me for installing AFNI, yet when I completed them, it still tells me 'command not found' for the 'afni' command.
sudo yum install libXp tcsh
sudo yum install PyQt4 R
(This was not correct, but I was able to get it to work with this):
sudo apt-get install libxp6 tcsh
sudo apt-get install python-qt4 r-base
Then:
cd
mkdir abin
Then it says to choose one of these binaries. I wasn't sure which one to choose, but I chose #3:
- linux_openmp : for multi-CPU systems, (needs libgomp)
- linux_openmp_64 : 64-bit version of the same
- linux_xorg7 : otherwise current linux package
- linux_xorg7_64 : 64-bit version of the same
Then:
set package = linux_xorg7
wget http://afni.nimh.nih.gov/pub/dist/tgz/$package.tgz
tar xvfz $package.tgz
mv $package/* abin
rmdir $package
and finally, add the AFNI package directory ~/abin to your path:
echo 'set path = ( $path ~/abin )' >> ~/.cshrc
Then it said to log out and log back in so the programs are recognized in the path, and then to try these commands upon login:
afni
suma
uber_subject.py
Only the last one worked. The others said 'command not found'.
What went wrong?
When I do 'echo $path' it shows this:
/usr/lib/lightdm/lightdm /usr/local/sbin /usr/local/bin /usr/sbin /usr/bin /sbin /bin /usr/games /usr/local/games /home/owner/abin /home/owner/abin
The output of ls -l /home/owner/abin is:
-rwxr-xr-x 1 owner owner 2134 Nov 29 21:01 @Install_AfniRetinoDemo
-rwxr-xr-x 1 owner owner 1892 Nov 29 21:01 @Install_FATCAT_DEMO
-rwxr-xr-x 1 owner owner 3465 Nov 29 21:01 @Install_InstaCorr_Demo
-rwxr-xr-x 1 owner owner 1683 Nov 29 21:01 @Install_MEICA_Demo
-rwxr-xr-x 1 owner owner 5269 Nov 29 21:01 @Install_RSFMRI_Motion_Group_Demo
-rwxr-xr-x 1 owner owner 2609 Nov 29 21:01 @Install_TSrestMovieDemo
-rwxr-xr-x 1 owner owner 902 Nov 29 21:01 @isOblique
-rwxr-xr-x 1 owner owner 3864 Nov 29 21:01 @IsoMasks
-rwxr-xr-x 1 owner owner 11329870 Nov 29 21:01 IsoSurface
-rwxr-xr-x 1 owner owner 3521 Nov 29 21:01 killer.h
-rwxr-xr-x 1 owner owner 18132 Nov 29 21:01 Level2.R
-rwxr-xr-x 1 owner owner 101340 Nov 29 21:01 lib_afni1D.py
-rw-r--r-- 1 owner owner 221272 Nov 29 21:01 libcoxplot.a
-rw-r--r-- 1 owner owner 220774 Nov 29 21:01 libf2c.a
-rw-r--r-- 1 owner owner 18582 Nov 29 20:53 libGLws.a
-rw-r--r-- 1 owner owner 1299298 Nov 29 21:00 libgts.a
-rwxr-xr-x 1 owner owner 11671 Nov 29 21:01 lib_matplot.py
-rw-r--r-- 1 owner owner 8400460 Nov 29 21:01 libmri.a
-rw-r--r-- 1 owner owner 750488 Nov 29 21:01 libmrix.a
-rwxr-xr-x 1 owner owner 67662 Nov 29 21:01 lib_qt_gui.py
-rw-r--r-- 1 owner owner 61316 Nov 30 14:40 lib_qt_gui.pyc
-rwxr-xr-x 1 owner owner 17868 Nov 29 21:01 lib_realtime.py
-rwxr-xr-x 1 owner owner 3929 Nov 29 21:01 lib_RR_plot.py
-rwxr-xr-x 1 owner owner 55020 Nov 29 21:01 lib_subjects.py
-rw-r--r-- 1 owner owner 46258 Nov 30 14:40 lib_subjects.pyc
-rw-r--r-- 1 owner owner 7842396 Nov 29 20:57 libSUMA.a
-rwxr-xr-x 1 owner owner 29947 Nov 29 21:01 lib_surf_clustsim.py
-rw-r--r-- 1 owner owner 8194 Nov 29 21:01 lib_system_check.py
-rwxr-xr-x 1 owner owner 10148 Nov 29 21:01 lib_textdata.py
-rw-r--r-- 1 owner owner 9272 Nov 30 14:40 lib_textdata.pyc
-rwxr-xr-x 1 owner owner 33042 Nov 29 21:01 lib_timing.py
-rwxr-xr-x 1 owner owner 31904 Nov 29 21:01 lib_uber_align.py
-rwxr-xr-x 1 owner owner 23453 Nov 29 21:01 lib_uber_skel.py
-rwxr-xr-x 1 owner owner 66434 Nov 29 21:01 lib_uber_subject.py
-rw-r--r-- 1 owner owner 55296 Nov 30 14:40 lib_uber_subject.pyc
-rwxr-xr-x 1 owner owner 23340 Nov 29 21:01 lib_uber_ttest.py
-rw-r--r-- 1 owner owner 258384 Nov 29 21:01 libvolpack.a
-rwxr-xr-x 1 owner owner 4517 Nov 29 21:01 lib_wx.py
-rwxr-xr-x 1 owner owner 2432 Nov 29 21:01 list_struct.h
-rwxr-xr-x 1 owner owner 23775 Nov 29 21:01 lpc_align.py
-rwxr-xr-x 1 owner owner 16378 Nov 29 21:01 machdep.h
-rwxr-xr-x 1 owner owner 11268219 Nov 29 21:01 MakeColorMap
-rwxr-xr-x 1 owner owner 33562 Nov 29 21:01 @MakeLabelTable
-rwxr-xr-x 1 owner owner 8745 Nov 29 21:01 @make_plug_diff
-rwxr-xr-x 1 owner owner 4141 Nov 29 21:01 make_pq_script.py
-rwxr-xr-x 1 owner owner 91329 Nov 29 21:01 make_random_timing.py
-rwxr-xr-x 1 owner owner 15388 Nov 29 21:01 @make_stim_file
-rwxr-xr-x 1 owner owner 11915 Nov 29 21:01 make_stim_times.py
-rwxr-xr-x 1 owner owner 11282021 Nov 29 21:01 MapIcosahedron
-rwxr-xr-x 1 owner owner 3496097 Nov 29 20:52 map_TrackID
-rwxr-xr-x 1 owner owner 9080 Nov 29 20:46 mayo_analyze
-rwxr-xr-x 1 owner owner 3975 Nov 29 21:01 mcw_glob.h
-rwxr-xr-x 1 owner owner 3483 Nov 29 21:01 mcw_malloc.h
drwxr-xr-x 4 owner owner 4096 Nov 29 20:33 meica.libs
-rwxr-xr-x 1 owner owner 26764 Nov 29 20:33 meica.py
-rwxr-xr-x 1 owner owner 1088640 Nov 29 20:33 mgh_wh_template+tlrc.BRIK
-rwxr-xr-x 1 owner owner 3246 Nov 29 20:33 mgh_wh_template+tlrc.HEAD
-rwxr-xr-x 1 owner owner 141 Nov 29 21:01 misc_math.h
-rw-r--r-- 1 owner owner 6244968 Nov 29 20:33 MNI152_1mm_uni+tlrc.BRIK.gz
-rw-r--r-- 1 owner owner 4686 Nov 29 20:33 MNI152_1mm_uni+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNIa_caez_colin27_T1_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2309 Nov 29 20:33 MNIa_caez_colin27_T1_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3657483 Nov 29 20:33 MNIa_caez_gw_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2658 Nov 29 20:33 MNIa_caez_gw_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 166760 Nov 29 20:33 MNIa_caez_lr_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2771 Nov 29 20:33 MNIa_caez_lr_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 270372 Nov 29 20:33 MNIa_caez_ml_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18038 Nov 29 20:33 MNIa_caez_ml_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 238153 Nov 29 20:33 MNIa_caez_mpm_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11872 Nov 29 20:33 MNIa_caez_mpm_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNIa_caez_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2309 Nov 29 20:33 MNIa_caez_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3240810 Nov 29 20:33 MNIa_caez_pmaps_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18134 Nov 29 20:33 MNIa_caez_pmaps_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 861626 Nov 29 20:33 MNI_avg152T2+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4983 Nov 29 20:33 MNI_avg152T2+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNI_caez_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2764 Nov 29 20:33 MNI_caez_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 266078 Nov 29 20:33 MNI_EPI+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4631 Nov 29 20:33 MNI_EPI+tlrc.HEAD
-rwxr-xr-x 1 owner owner 5545 Nov 29 20:52 model_beta.so
-rwxr-xr-x 1 owner owner 5160 Nov 29 20:52 model_constant.so
-rwxr-xr-x 1 owner owner 13916 Nov 29 20:52 model_conv_cosine4.so
-rwxr-xr-x 1 owner owner 15035 Nov 29 20:52 model_conv_diffgamma.so
-rwxr-xr-x 1 owner owner 8883 Nov 29 20:52 model_convgamma2a.so
-rwxr-xr-x 1 owner owner 8183 Nov 29 20:52 model_convgamma.so
-rwxr-xr-x 1 owner owner 31047 Nov 29 20:52 model_demri_3.so
-rwxr-xr-x 1 owner owner 5416 Nov 29 20:52 model_diffexp.so
-rwxr-xr-x 1 owner owner 5262 Nov 29 20:52 model_diffusion.so
-rwxr-xr-x 1 owner owner 5598 Nov 29 20:52 model_expMEMRI3.so
-rwxr-xr-x 1 owner owner 5309 Nov 29 20:52 model_expMEMRI.so
-rwxr-xr-x 1 owner owner 9428 Nov 29 20:52 model_expr2.so
-rwxr-xr-x 1 owner owner 5248 Nov 29 20:52 model_exp.so
-rwxr-xr-x 1 owner owner 5457 Nov 29 20:52 model_gammavar.so
-rwxr-xr-x 1 owner owner 5346 Nov 29 20:52 model_linear.so
-rwxr-xr-x 1 owner owner 5450 Nov 29 20:52 model_linplusort.so
-rwxr-xr-x 1 owner owner 9364 Nov 29 20:52 model_michaelis_menton.so
-rwxr-xr-x 1 owner owner 5089 Nov 29 20:52 model_null.so
-rwxr-xr-x 1 owner owner 5289 Nov 29 20:52 model_quadratic.so
-rwxr-xr-x 1 owner owner 5686 Nov 29 20:52 model_sinewave_apf.so
-rwxr-xr-x 1 owner owner 5345 Nov 29 20:52 model_sinewave_ap.so
-rwxr-xr-x 1 owner owner 5447 Nov 29 20:52 model_squarewave_apf.so
-rwxr-xr-x 1 owner owner 5382 Nov 29 20:52 model_squarewave_ap.so
-rwxr-xr-x 1 owner owner 5546 Nov 29 20:52 model_trnglwave_apf.so
-rwxr-xr-x 1 owner owner 5485 Nov 29 20:52 model_trnglwave_ap.so
-rwxr-xr-x 1 owner owner 5088 Nov 29 20:52 model_zero.so
-rwxr-xr-x 1 owner owner 8004 Nov 29 21:01 module_test_lib.py
-rw-r--r-- 1 owner owner 6312 Nov 30 14:40 module_test_lib.pyc
-rwxr-xr-x 1 owner owner 4947 Nov 29 21:01 @move.to.series.dirs
-rwxr-xr-x 1 owner owner 206652 Nov 29 20:51 mpeg_encode
-rwxr-xr-x 1 owner owner 6496 Nov 29 21:01 mri_dicom_stuff.h
-rwxr-xr-x 1 owner owner 90294 Nov 29 21:01 mrilib.h
-rwxr-xr-x 1 owner owner 3434886 Nov 29 20:43 mritopgm
-rwxr-xr-x 1 owner owner 2696 Nov 29 21:01 mri_warpfield.h
-rwxr-xr-x 1 owner owner 1986 Nov 29 21:01 multivector.h
-rwxr-xr-x 1 owner owner 6890 Nov 29 20:51 mycat
-rwxr-xr-x 1 owner owner 3434851 Nov 29 20:51 myget
-rwxr-xr-x 1 owner owner 11095 Nov 29 21:01 neuro_deconvolve.py
-rwxr-xr-x 1 owner owner 3435203 Nov 29 20:46 nicat
-rwxr-xr-x 1 owner owner 3439008 Nov 29 20:48 niccc
-rwxr-xr-x 1 owner owner 69232 Nov 29 21:01 nifti1.h
-rwxr-xr-x 1 owner owner 25666 Nov 29 21:01 nifti1_io.h
-rwxr-xr-x 1 owner owner 118029 Nov 29 20:47 nifti1_test
-rwxr-xr-x 1 owner owner 8385 Nov 29 21:01 nifticdf.h
-rwxr-xr-x 1 owner owner 202223 Nov 29 20:46 nifti_tool
-rwxr-xr-x 1 owner owner 3452960 Nov 29 20:48 niml_feedme
-rwxr-xr-x 1 owner owner 49354 Nov 29 21:01 niml.h
-rwxr-xr-x 1 owner owner 797 Nov 29 21:01 @NoExt
-rwxr-xr-x 1 owner owner 7876 Nov 29 21:01 @NoisySkullStrip
-rwxr-xr-x 1 owner owner 1619 Nov 29 21:01 @NoPound
-rwxr-xr-x 1 owner owner 3189 Nov 29 21:01 @np
-rwxr-xr-x 1 owner owner 3434883 Nov 29 20:43 nsize
-rwxr-xr-x 1 owner owner 19944 Nov 29 21:01 option_list.py
-rw-r--r-- 1 owner owner 15044 Nov 30 14:40 option_list.pyc
-rwxr-xr-x 1 owner owner 636 Nov 29 21:01 @parse_afni_name
-rwxr-xr-x 1 owner owner 565 Nov 29 21:01 @parse_name
-rwxr-xr-x 1 owner owner 11253274 Nov 29 21:01 ParseName
-rwxr-xr-x 1 owner owner 317923 Nov 29 20:33 paxinos_elsevier_tissue_lores+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 5076 Nov 29 20:33 paxinos_elsevier_tissue_lores+tlrc.HEAD
-rwxr-xr-x 1 owner owner 9467 Nov 29 20:52 plug_3ddot.so
-rwxr-xr-x 1 owner owner 19628 Nov 29 20:52 plug_3Ddump_V2.so
-rwxr-xr-x 1 owner owner 8459 Nov 29 20:52 plug_3ddup.so
-rwxr-xr-x 1 owner owner 446917 Nov 29 20:53 plug_3dsvm.so
-rwxr-xr-x 1 owner owner 24075 Nov 29 20:52 plug_4Ddump.so
-rwxr-xr-x 1 owner owner 24403 Nov 29 20:52 plug_afnihistory.so
-rwxr-xr-x 1 owner owner 19302 Nov 29 20:53 plug_aslA3D3.so
-rwxr-xr-x 1 owner owner 28239 Nov 29 20:52 plug_betafit.so
-rwxr-xr-x 1 owner owner 13850 Nov 29 20:52 plug_clust.so
-rwxr-xr-x 1 owner owner 6749 Nov 29 20:52 plug_compress.so
-rwxr-xr-x 1 owner owner 8651 Nov 29 20:52 plug_coorder.so
-rwxr-xr-x 1 owner owner 11543 Nov 29 20:52 plug_copy.so
-rwxr-xr-x 1 owner owner 373154 Nov 29 20:53 plug_crender.so
-rwxr-xr-x 1 owner owner 59351 Nov 29 20:52 plug_deconvolve.so
-rwxr-xr-x 1 owner owner 45070 Nov 29 20:53 plug_delay_V2.so
-rwxr-xr-x 1 owner owner 104311 Nov 29 20:52 plug_drawdset.so
-rwxr-xr-x 1 owner owner 28058 Nov 29 20:52 plug_edit.so
-rwxr-xr-x 1 owner owner 20423 Nov 29 20:53 plug_extract.so
-rwxr-xr-x 1 owner owner 16036 Nov 29 20:53 plug_fourier.so
-rwxr-xr-x 1 owner owner 9410 Nov 29 20:53 plug_hemisub.so
-rwxr-xr-x 1 owner owner 18399 Nov 29 20:52 plug_histog_multi.so
-rwxr-xr-x 1 owner owner 32771 Nov 29 20:52 plug_histog.so
-rwxr-xr-x 1 owner owner 13098 Nov 29 20:52 plug_imreg.so
-rwxr-xr-x 1 owner owner 13511 Nov 29 20:52 plug_L1fit.so
-rwxr-xr-x 1 owner owner 20026 Nov 29 20:52 plug_lsqfit.so
-rwxr-xr-x 1 owner owner 17777 Nov 29 20:52 plug_maskave.so
-rwxr-xr-x 1 owner owner 20984 Nov 29 20:53 plug_maskcalc.so
-rwxr-xr-x 1 owner owner 60485 Nov 29 20:53 plug_maxima.so
-rwxr-xr-x 1 owner owner 72383 Nov 29 20:52 plug_nlfit.so
-rwxr-xr-x 1 owner owner 34478 Nov 29 20:52 plug_notes.so
-rwxr-xr-x 1 owner owner 22417 Nov 29 20:52 plug_nth_dataset.so
-rwxr-xr-x 1 owner owner 54029 Nov 29 20:52 plug_nudge.so
-rwxr-xr-x 1 owner owner 3443823 Nov 29 20:47 plugout_drive
-rwxr-xr-x 1 owner owner 3439465 Nov 29 20:44 plugout_ijk
-rwxr-xr-x 1 owner owner 3439492 Nov 29 20:44 plugout_tt
-rwxr-xr-x 1 owner owner 3444047 Nov 29 20:43 plugout_tta
-rwxr-xr-x 1 owner owner 37831 Nov 29 20:53 plug_permtest.so
-rwxr-xr-x 1 owner owner 18348 Nov 29 20:52 plug_power.so
-rwxr-xr-x 1 owner owner 146125 Nov 29 20:52 plug_realtime.so
-rwxr-xr-x 1 owner owner 8869 Nov 29 20:52 plug_rename.so
-rwxr-xr-x 1 owner owner 4273 Nov 29 20:52 plug_render.so
-rwxr-xr-x 1 owner owner 24899 Nov 29 20:53 plug_reorder.so
-rwxr-xr-x 1 owner owner 27546 Nov 29 20:53 plug_retroicor.so
-rwxr-xr-x 1 owner owner 187812 Nov 29 20:53 plug_roiedit.so
-rwxr-xr-x 1 owner owner 15365 Nov 29 20:52 plug_roiplot.so
-rwxr-xr-x 1 owner owner 19929 Nov 29 20:52 plug_scatplot.so
-rwxr-xr-x 1 owner owner 19544 Nov 29 20:52 plug_second_dataset.so
-rwxr-xr-x 1 owner owner 8731 Nov 29 20:52 plug_stats.so
-rwxr-xr-x 1 owner owner 15797 Nov 29 20:53 plug_stavg.so
-rwxr-xr-x 1 owner owner 42441 Nov 29 20:52 plug_tag.so
-rwxr-xr-x 1 owner owner 14919 Nov 29 20:53 plug_threshold.so
-rwxr-xr-x 1 owner owner 4274 Nov 29 20:52 plug_ttget.so
-rwxr-xr-x 1 owner owner 44427 Nov 29 20:53 plug_vol2surf.so
-rwxr-xr-x 1 owner owner 24159 Nov 29 20:52 plug_volreg.so
-rwxr-xr-x 1 owner owner 28108 Nov 29 20:52 plug_wavelets.so
-rwxr-xr-x 1 owner owner 10030 Nov 29 20:52 plug_zeropad.so
-rwxr-xr-x 1 owner owner 11308903 Nov 29 21:01 prompt_user
-rwxr-xr-x 1 owner owner 1783 Nov 29 21:01 @Purify_1D
-rwxr-xr-x 1 owner owner 8289 Nov 29 21:01 python_module_test.py
-rwxr-xr-x 1 owner owner 298646 Nov 29 20:45 qdelaunay
-rwxr-xr-x 1 owner owner 302292 Nov 29 20:45 qhull
-rwxr-xr-x 1 owner owner 1909 Nov 29 21:01 quick.alpha.vals.py
-rwxr-xr-x 1 owner owner 11257559 Nov 29 21:01 quickspec
-rwxr-xr-x 1 owner owner 8523 Nov 29 21:01 @Quiet_Talkers
-rwxr-xr-x 1 owner owner 19607 Nov 29 21:01 @radial_correlate
-rwxr-xr-x 1 owner owner 292354 Nov 29 20:45 rbox
-rwxr-xr-x 1 owner owner 1511 Nov 29 21:01 rcmat.h
-rw-r--r-- 1 owner owner 2402 Nov 29 21:01 README.3dsvm.realtime
-rw-r--r-- 1 owner owner 14096 Nov 29 21:01 README.afnigui
-rw-r--r-- 1 owner owner 6080 Nov 29 21:01 README.atlas_building
-rw-r--r-- 1 owner owner 45863 Nov 29 21:01 README.attributes
-rw-r--r-- 1 owner owner 46932 Nov 29 21:01 README.bzip2
-rwxr-xr-x 1 owner owner 2194 Nov 29 20:33 README.caez_atlas_build
-rw-r--r-- 1 owner owner 476 Nov 29 21:01 README.changes
-rw-r--r-- 1 owner owner 4707 Nov 29 21:01 README.compression
-rw-r--r-- 1 owner owner 25610 Nov 29 21:01 README.copyright
-rw-r--r-- 1 owner owner 30919 Nov 29 21:01 README.driver
-rw-r--r-- 1 owner owner 173673 Nov 29 21:01 README.environment
-rw-r--r-- 1 owner owner 5657 Nov 29 21:01 README.func_types
-rw-r--r-- 1 owner owner 587 Nov 29 21:01 README.Ifile
-rw-r--r-- 1 owner owner 6451 Nov 29 21:01 README.notes
-rw-r--r-- 1 owner owner 1684 Nov 29 21:01 README.permtest
-rw-r--r-- 1 owner owner 553 Nov 29 21:01 README.plugouts
-rw-r--r-- 1 owner owner 18268 Nov 29 21:01 README.realtime
-rw-r--r-- 1 owner owner 31330 Nov 29 21:01 README.registration
-rw-r--r-- 1 owner owner 7415 Nov 29 21:01 README.render_scripts
-rw-r--r-- 1 owner owner 6842 Nov 29 21:01 README.roi
-rw-r--r-- 1 owner owner 9487 Nov 29 21:01 README.setup
-rw-r--r-- 1 owner owner 6113 Nov 29 21:01 README.volreg
-rw-r--r-- 1 owner owner 1649 Nov 29 21:01 README.web
-rw-r--r-- 1 owner owner 0 Nov 29 21:01 README.ziad
-rwxr-xr-x 1 owner owner 22443 Nov 29 21:01 realtime_receiver.py
-rwxr-xr-x 1 owner owner 12487 Nov 29 21:01 @RenamePanga
-rwxr-xr-x 1 owner owner 6826 Nov 29 21:01 @Reorder
-rwxr-xr-x 1 owner owner 69275 Nov 29 21:01 @RetinoProc
-rwxr-xr-x 1 owner owner 1010 Nov 29 21:01 @R_funclist
-rwxr-xr-x 1 owner owner 1161 Nov 29 21:01 r_idisp.h
-rwxr-xr-x 1 owner owner 4891010 Nov 29 20:40 R_io.so
-rwxr-xr-x 1 owner owner 742 Nov 29 21:01 r_misc.h
-rwxr-xr-x 1 owner owner 3434934 Nov 29 20:51 rmz
-rwxr-xr-x 1 owner owner 830 Nov 29 21:01 r_new_resam_dset.h
-rwxr-xr-x 1 owner owner 11261471 Nov 29 21:01 ROI2dataset
-rwxr-xr-x 1 owner owner 16964 Nov 29 21:01 @ROI_Corr_Mat
-rwxr-xr-x 1 owner owner 11318872 Nov 29 21:01 ROIgrow
-rwxr-xr-x 1 owner owner 3473422 Nov 29 20:46 rotcom
-rwxr-xr-x 1 owner owner 3448411 Nov 29 20:44 RSFgen
-rwxr-xr-x 1 owner owner 3446887 Nov 29 20:46 rtfeedme
-rwxr-xr-x 1 owner owner 11261647 Nov 29 21:01 SampBias
-rwxr-xr-x 1 owner owner 11267819 Nov 29 21:01 ScaleToMap
-rwxr-xr-x 1 owner owner 10283 Nov 29 21:01 @ScaleVolume
-rwxr-xr-x 1 owner owner 305 Nov 29 20:33 scan_niml_vals.csh
-rwxr-xr-x 1 owner owner 3813 Nov 29 21:01 @ScriptCheck
-rwxr-xr-x 1 owner owner 28744 Nov 29 20:46 serial_helper
-rwxr-xr-x 1 owner owner 3443924 Nov 29 20:43 sfim
-rwxr-xr-x 1 owner owner 5491 Nov 29 21:01 @Shift_Volume
-rwxr-xr-x 1 owner owner 2943 Nov 29 21:01 @ShowDynamicRange
-rwxr-xr-x 1 owner owner 3439042 Nov 29 20:46 siemens_vision
-rwxr-xr-x 1 owner owner 21966 Nov 29 21:01 Signatures.R
-rwxr-xr-x 1 owner owner 27916 Nov 29 21:01 @simulate_motion
-rwxr-xr-x 1 owner owner 12546 Nov 29 21:01 slow_surf_clustsim.py
-rwxr-xr-x 1 owner owner 1063 Nov 29 21:01 smooth.R
-rwxr-xr-x 1 owner owner 11284079 Nov 29 21:01 SpharmDeco
-rwxr-xr-x 1 owner owner 6649 Nov 29 21:01 @Spharm.examples
-rwxr-xr-x 1 owner owner 11275248 Nov 29 21:01 SpharmReco
-rwxr-xr-x 1 owner owner 7612 Nov 29 20:43 sqwave
-rwxr-xr-x 1 owner owner 1128 Nov 29 21:01 @statauxcode
-rwxr-xr-x 1 owner owner 3439004 Nov 29 20:45 strblast
-rwxr-xr-x 1 owner owner 12036076 Nov 29 21:01 suma
-rwxr-xr-x 1 owner owner 46630 Nov 29 21:01 @SUMA_AlignToExperiment
-rwxr-xr-x 1 owner owner 4454 Nov 29 21:01 suma_change_spec
-rwxr-xr-x 1 owner owner 3663 Nov 29 21:01 @SUMA_FSvolToBRIK
-rwxr-xr-x 1 owner owner 16282 Nov 29 21:01 SUMA_glxdino
-rwxr-xr-x 1 owner owner 30640 Nov 29 21:01 @SUMA_Make_Spec_Caret
-rwxr-xr-x 1 owner owner 43418 Nov 29 21:01 @SUMA_Make_Spec_FS
-rwxr-xr-x 1 owner owner 20693 Nov 29 21:01 @SUMA_Make_Spec_SF
-rwxr-xr-x 1 owner owner 1196794 Nov 29 21:01 SUMA_paperplane
-rwxr-xr-x 1 owner owner 16235 Nov 29 21:01 SUMA_pixmap2eps
-rwxr-xr-x 1 owner owner 11319879 Nov 29 21:01 Surf2VolCoord
-rwxr-xr-x 1 owner owner 11288478 Nov 29 21:01 SurfaceMetrics
-rwxr-xr-x 1 owner owner 11265699 Nov 29 21:01 SurfClust
-rwxr-xr-x 1 owner owner 11260459 Nov 29 21:01 SurfDist
-rwxr-xr-x 1 owner owner 11307483 Nov 29 21:01 SurfDsetInfo
-rwxr-xr-x 1 owner owner 11313913 Nov 29 21:01 SurfExtrema
-rwxr-xr-x 1 owner owner 11325245 Nov 29 21:01 SurfFWHM
-rwxr-xr-x 1 owner owner 11309999 Nov 29 21:01 SurfInfo
-rwxr-xr-x 1 owner owner 11335258 Nov 29 21:01 SurfMeasures
-rwxr-xr-x 1 owner owner 11721032 Nov 29 21:01 SurfMesh
-rwxr-xr-x 1 owner owner 11268881 Nov 29 21:01 SurfPatch
-rwxr-xr-x 1 owner owner 11261872 Nov 29 21:01 SurfQual
-rwxr-xr-x 1 owner owner 11318969 Nov 29 21:01 SurfRetinoMap
-rwxr-xr-x 1 owner owner 11323055 Nov 29 21:01 SurfSmooth
-rwxr-xr-x 1 owner owner 11984 Nov 29 21:01 @SurfSmooth.HEAT_07.examples
-rwxr-xr-x 1 owner owner 11330294 Nov 29 21:01 SurfToSurf
-rwxr-xr-x 1 owner owner 10077 Nov 29 21:01 @T1scale
-rwxr-xr-x 1 owner owner 1938 Nov 29 21:01 tagset.h
-rwxr-xr-x 1 owner owner 3444177 Nov 29 20:43 tfim
-rwxr-xr-x 1 owner owner 6453 Nov 29 21:01 thd_atlas.h
-rwxr-xr-x 1 owner owner 3010 Nov 29 21:01 thd_compress.h
-rwxr-xr-x 1 owner owner 5926 Nov 29 21:01 thd_iochan.h
-rwxr-xr-x 1 owner owner 1678 Nov 29 21:01 thd_maker.h
-rwxr-xr-x 1 owner owner 1052 Nov 29 21:01 thd_ttatlas_CA_EZ.h
-rwxr-xr-x 1 owner owner 28648 Nov 29 21:01 thd_ttatlas_query.h
-rwxr-xr-x 1 owner owner 1106 Nov 29 21:01 @TimeDiff
-rwxr-xr-x 1 owner owner 64032 Nov 29 21:01 timing_tool.py
-rwxr-xr-x 1 owner owner 6070158 Nov 29 20:43 to3d
-rwxr-xr-x 1 owner owner 3729 Nov 29 21:01 @toMNI_Awarp
-rwxr-xr-x 1 owner owner 16674 Nov 29 21:01 @toMNI_Qwarpar
-rwxr-xr-x 1 owner owner 2004 Nov 29 21:01 @ToRAI
-rwxr-xr-x 1 owner owner 377624 Nov 29 20:33 TTatlas+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 40896 Nov 29 20:33 TTatlas+tlrc.HEAD
-rwxr-xr-x 1 owner owner 794290 Nov 29 20:33 TT_avg152T1+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4932 Nov 29 20:33 TT_avg152T1+tlrc.HEAD
-rwxr-xr-x 1 owner owner 781798 Nov 29 20:33 TT_avg152T2+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 5440 Nov 29 20:33 TT_avg152T2+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1356732 Nov 29 20:33 TT_caez_colin27_T1_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8799 Nov 29 20:33 TT_caez_colin27_T1_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2928274 Nov 29 20:33 TT_caez_gw_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8473 Nov 29 20:33 TT_caez_gw_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 151399 Nov 29 20:33 TT_caez_lr_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8585 Nov 29 20:33 TT_caez_lr_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 230450 Nov 29 20:33 TT_caez_ml_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 23852 Nov 29 20:33 TT_caez_ml_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 197143 Nov 29 20:33 TT_caez_mpm_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 17687 Nov 29 20:33 TT_caez_mpm_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2953181 Nov 29 20:33 TT_caez_pmaps_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 23949 Nov 29 20:33 TT_caez_pmaps_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 138445 Nov 29 20:33 TT_desai_dd_mpm+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 35035 Nov 29 20:33 TT_desai_dd_mpm+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3519331 Nov 29 20:33 TT_desai_ddpmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 214682 Nov 29 20:33 TT_desai_ddpmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 131991 Nov 29 20:33 TT_desai_dk_mpm+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 21386 Nov 29 20:33 TT_desai_dk_mpm+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2419046 Nov 29 20:33 TT_desai_dkpmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 128396 Nov 29 20:33 TT_desai_dkpmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1568559 Nov 29 20:33 TT_desai_fspmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 112365 Nov 29 20:33 TT_desai_fspmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 791958 Nov 29 20:33 TT_EPI+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4897 Nov 29 20:33 TT_EPI+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2184281 Nov 29 20:33 TT_icbm452+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8730 Nov 29 20:33 TT_icbm452+tlrc.HEAD
-rwxr-xr-x 1 owner owner 701987 Nov 29 20:33 TT_N27_CA_EZ_MPM+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 12387 Nov 29 20:33 TT_N27_CA_EZ_MPM+tlrc.HEAD
-rwxr-xr-x 1 owner owner 552746 Nov 29 20:33 TT_N27_CA_EZ_PMaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18436 Nov 29 20:33 TT_N27_CA_EZ_PMaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 59999 Nov 29 20:33 TT_N27_EZ_LR+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11839 Nov 29 20:33 TT_N27_EZ_LR+tlrc.HEAD
-rwxr-xr-x 1 owner owner 114420 Nov 29 20:33 TT_N27_EZ_ML+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 15625 Nov 29 20:33 TT_N27_EZ_ML+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1353925 Nov 29 20:33 TT_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11447 Nov 29 20:33 TT_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 9891 Nov 29 21:01 uber_align_test.py
-rwxr-xr-x 1 owner owner 10798 Nov 29 21:01 uber_proc.py
-rwxr-xr-x 1 owner owner 10002 Nov 29 21:01 uber_skel.py
-rwxr-xr-x 1 owner owner 19585 Nov 29 21:01 uber_subject.py
-rwxr-xr-x 1 owner owner 12252 Nov 29 21:01 uber_ttest.py
-rwxr-xr-x 1 owner owner 45044 Nov 29 21:01 ui_xmat.py
-rw-r--r-- 1 owner owner 4784 Nov 29 20:33 UNC_infant_CustomAtlases.niml
-rwxr-xr-x 1 owner owner 6186 Nov 29 21:01 @UpdateAfni
-rwxr-xr-x 1 owner owner 14894 Nov 29 21:01 @update.afni.binaries
-rwxr-xr-x 1 owner owner 34890 Nov 29 21:01 vecmat.h
-rwxr-xr-x 1 owner owner 3578702 Nov 29 20:45 Vecwarp
-rwxr-xr-x 1 owner owner 6508 Nov 29 21:01 vol2surf.h
-rwxr-xr-x 1 owner owner 3150 Nov 29 21:01 @VolCenter
-rwxr-xr-x 1 owner owner 25376 Nov 29 21:01 volpack.h
-rwxr-xr-x 1 owner owner 3453741 Nov 29 20:43 waver
-rwxr-xr-x 1 owner owner 3912691 Nov 29 20:47 whereami
-rwxr-xr-x 1 owner owner 17987 Nov 29 20:51 whirlgif
-rwxr-xr-x 1 owner owner 453 Nov 29 21:01 xmat_tool.py
-rwxr-xr-x 1 owner owner 5943491 Nov 29 20:51 Xphace
-rwxr-xr-x 1 owner owner 3056 Nov 29 21:01 znzlib.h
ubuntu:~>
And I don't know if this is all of it. Is it supposed to be this long?
software-installation
edited Mar 14 '14 at 21:45
Braiam
52.3k20138223
asked Nov 30 '13 at 20:39
SarahSarah
1315
bumped to the homepage by Community♦ 51 mins ago
This question has answers that may be good or bad; the system has marked it active so that they can be reviewed.
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0
These are the instructions given to me for installing AFNI, yet when I completed them, it still tells me 'command not found' for the 'afni' command.
sudo yum install libXp tcsh
sudo yum install PyQt4 R
(This was not correct, but I was able to get it to work with this):
sudo apt-get install libxp6 tcsh
sudo apt-get install python-qt4 r-base
Then:
cd
mkdir abin
Then it says to choose one of these binaries. I wasn't sure which one to choose, but I chose #3:
- linux_openmp : for multi-CPU systems, (needs libgomp)
- linux_openmp_64 : 64-bit version of the same
- linux_xorg7 : otherwise current linux package
- linux_xorg7_64 : 64-bit version of the same
Then:
set package = linux_xorg7
wget http://afni.nimh.nih.gov/pub/dist/tgz/$package.tgz
tar xvfz $package.tgz
mv $package/* abin
rmdir $package
and finally, add the AFNI package directory ~/abin to your path:
echo 'set path = ( $path ~/abin )' >> ~/.cshrc
Then it said to log out and log back in so the programs are recognized in the path, and then to try these commands upon login:
afni
suma
uber_subject.py
Only the last one worked. The others said 'command not found'.
What went wrong?
When I do 'echo $path' it shows this:
/usr/lib/lightdm/lightdm /usr/local/sbin /usr/local/bin /usr/sbin /usr/bin /sbin /bin /usr/games /usr/local/games /home/owner/abin /home/owner/abin
The output of ls -l /home/owner/abin is:
-rwxr-xr-x 1 owner owner 2134 Nov 29 21:01 @Install_AfniRetinoDemo
-rwxr-xr-x 1 owner owner 1892 Nov 29 21:01 @Install_FATCAT_DEMO
-rwxr-xr-x 1 owner owner 3465 Nov 29 21:01 @Install_InstaCorr_Demo
-rwxr-xr-x 1 owner owner 1683 Nov 29 21:01 @Install_MEICA_Demo
-rwxr-xr-x 1 owner owner 5269 Nov 29 21:01 @Install_RSFMRI_Motion_Group_Demo
-rwxr-xr-x 1 owner owner 2609 Nov 29 21:01 @Install_TSrestMovieDemo
-rwxr-xr-x 1 owner owner 902 Nov 29 21:01 @isOblique
-rwxr-xr-x 1 owner owner 3864 Nov 29 21:01 @IsoMasks
-rwxr-xr-x 1 owner owner 11329870 Nov 29 21:01 IsoSurface
-rwxr-xr-x 1 owner owner 3521 Nov 29 21:01 killer.h
-rwxr-xr-x 1 owner owner 18132 Nov 29 21:01 Level2.R
-rwxr-xr-x 1 owner owner 101340 Nov 29 21:01 lib_afni1D.py
-rw-r--r-- 1 owner owner 221272 Nov 29 21:01 libcoxplot.a
-rw-r--r-- 1 owner owner 220774 Nov 29 21:01 libf2c.a
-rw-r--r-- 1 owner owner 18582 Nov 29 20:53 libGLws.a
-rw-r--r-- 1 owner owner 1299298 Nov 29 21:00 libgts.a
-rwxr-xr-x 1 owner owner 11671 Nov 29 21:01 lib_matplot.py
-rw-r--r-- 1 owner owner 8400460 Nov 29 21:01 libmri.a
-rw-r--r-- 1 owner owner 750488 Nov 29 21:01 libmrix.a
-rwxr-xr-x 1 owner owner 67662 Nov 29 21:01 lib_qt_gui.py
-rw-r--r-- 1 owner owner 61316 Nov 30 14:40 lib_qt_gui.pyc
-rwxr-xr-x 1 owner owner 17868 Nov 29 21:01 lib_realtime.py
-rwxr-xr-x 1 owner owner 3929 Nov 29 21:01 lib_RR_plot.py
-rwxr-xr-x 1 owner owner 55020 Nov 29 21:01 lib_subjects.py
-rw-r--r-- 1 owner owner 46258 Nov 30 14:40 lib_subjects.pyc
-rw-r--r-- 1 owner owner 7842396 Nov 29 20:57 libSUMA.a
-rwxr-xr-x 1 owner owner 29947 Nov 29 21:01 lib_surf_clustsim.py
-rw-r--r-- 1 owner owner 8194 Nov 29 21:01 lib_system_check.py
-rwxr-xr-x 1 owner owner 10148 Nov 29 21:01 lib_textdata.py
-rw-r--r-- 1 owner owner 9272 Nov 30 14:40 lib_textdata.pyc
-rwxr-xr-x 1 owner owner 33042 Nov 29 21:01 lib_timing.py
-rwxr-xr-x 1 owner owner 31904 Nov 29 21:01 lib_uber_align.py
-rwxr-xr-x 1 owner owner 23453 Nov 29 21:01 lib_uber_skel.py
-rwxr-xr-x 1 owner owner 66434 Nov 29 21:01 lib_uber_subject.py
-rw-r--r-- 1 owner owner 55296 Nov 30 14:40 lib_uber_subject.pyc
-rwxr-xr-x 1 owner owner 23340 Nov 29 21:01 lib_uber_ttest.py
-rw-r--r-- 1 owner owner 258384 Nov 29 21:01 libvolpack.a
-rwxr-xr-x 1 owner owner 4517 Nov 29 21:01 lib_wx.py
-rwxr-xr-x 1 owner owner 2432 Nov 29 21:01 list_struct.h
-rwxr-xr-x 1 owner owner 23775 Nov 29 21:01 lpc_align.py
-rwxr-xr-x 1 owner owner 16378 Nov 29 21:01 machdep.h
-rwxr-xr-x 1 owner owner 11268219 Nov 29 21:01 MakeColorMap
-rwxr-xr-x 1 owner owner 33562 Nov 29 21:01 @MakeLabelTable
-rwxr-xr-x 1 owner owner 8745 Nov 29 21:01 @make_plug_diff
-rwxr-xr-x 1 owner owner 4141 Nov 29 21:01 make_pq_script.py
-rwxr-xr-x 1 owner owner 91329 Nov 29 21:01 make_random_timing.py
-rwxr-xr-x 1 owner owner 15388 Nov 29 21:01 @make_stim_file
-rwxr-xr-x 1 owner owner 11915 Nov 29 21:01 make_stim_times.py
-rwxr-xr-x 1 owner owner 11282021 Nov 29 21:01 MapIcosahedron
-rwxr-xr-x 1 owner owner 3496097 Nov 29 20:52 map_TrackID
-rwxr-xr-x 1 owner owner 9080 Nov 29 20:46 mayo_analyze
-rwxr-xr-x 1 owner owner 3975 Nov 29 21:01 mcw_glob.h
-rwxr-xr-x 1 owner owner 3483 Nov 29 21:01 mcw_malloc.h
drwxr-xr-x 4 owner owner 4096 Nov 29 20:33 meica.libs
-rwxr-xr-x 1 owner owner 26764 Nov 29 20:33 meica.py
-rwxr-xr-x 1 owner owner 1088640 Nov 29 20:33 mgh_wh_template+tlrc.BRIK
-rwxr-xr-x 1 owner owner 3246 Nov 29 20:33 mgh_wh_template+tlrc.HEAD
-rwxr-xr-x 1 owner owner 141 Nov 29 21:01 misc_math.h
-rw-r--r-- 1 owner owner 6244968 Nov 29 20:33 MNI152_1mm_uni+tlrc.BRIK.gz
-rw-r--r-- 1 owner owner 4686 Nov 29 20:33 MNI152_1mm_uni+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNIa_caez_colin27_T1_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2309 Nov 29 20:33 MNIa_caez_colin27_T1_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3657483 Nov 29 20:33 MNIa_caez_gw_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2658 Nov 29 20:33 MNIa_caez_gw_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 166760 Nov 29 20:33 MNIa_caez_lr_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2771 Nov 29 20:33 MNIa_caez_lr_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 270372 Nov 29 20:33 MNIa_caez_ml_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18038 Nov 29 20:33 MNIa_caez_ml_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 238153 Nov 29 20:33 MNIa_caez_mpm_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11872 Nov 29 20:33 MNIa_caez_mpm_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNIa_caez_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2309 Nov 29 20:33 MNIa_caez_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3240810 Nov 29 20:33 MNIa_caez_pmaps_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18134 Nov 29 20:33 MNIa_caez_pmaps_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 861626 Nov 29 20:33 MNI_avg152T2+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4983 Nov 29 20:33 MNI_avg152T2+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNI_caez_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2764 Nov 29 20:33 MNI_caez_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 266078 Nov 29 20:33 MNI_EPI+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4631 Nov 29 20:33 MNI_EPI+tlrc.HEAD
-rwxr-xr-x 1 owner owner 5545 Nov 29 20:52 model_beta.so
-rwxr-xr-x 1 owner owner 5160 Nov 29 20:52 model_constant.so
-rwxr-xr-x 1 owner owner 13916 Nov 29 20:52 model_conv_cosine4.so
-rwxr-xr-x 1 owner owner 15035 Nov 29 20:52 model_conv_diffgamma.so
-rwxr-xr-x 1 owner owner 8883 Nov 29 20:52 model_convgamma2a.so
-rwxr-xr-x 1 owner owner 8183 Nov 29 20:52 model_convgamma.so
-rwxr-xr-x 1 owner owner 31047 Nov 29 20:52 model_demri_3.so
-rwxr-xr-x 1 owner owner 5416 Nov 29 20:52 model_diffexp.so
-rwxr-xr-x 1 owner owner 5262 Nov 29 20:52 model_diffusion.so
-rwxr-xr-x 1 owner owner 5598 Nov 29 20:52 model_expMEMRI3.so
-rwxr-xr-x 1 owner owner 5309 Nov 29 20:52 model_expMEMRI.so
-rwxr-xr-x 1 owner owner 9428 Nov 29 20:52 model_expr2.so
-rwxr-xr-x 1 owner owner 5248 Nov 29 20:52 model_exp.so
-rwxr-xr-x 1 owner owner 5457 Nov 29 20:52 model_gammavar.so
-rwxr-xr-x 1 owner owner 5346 Nov 29 20:52 model_linear.so
-rwxr-xr-x 1 owner owner 5450 Nov 29 20:52 model_linplusort.so
-rwxr-xr-x 1 owner owner 9364 Nov 29 20:52 model_michaelis_menton.so
-rwxr-xr-x 1 owner owner 5089 Nov 29 20:52 model_null.so
-rwxr-xr-x 1 owner owner 5289 Nov 29 20:52 model_quadratic.so
-rwxr-xr-x 1 owner owner 5686 Nov 29 20:52 model_sinewave_apf.so
-rwxr-xr-x 1 owner owner 5345 Nov 29 20:52 model_sinewave_ap.so
-rwxr-xr-x 1 owner owner 5447 Nov 29 20:52 model_squarewave_apf.so
-rwxr-xr-x 1 owner owner 5382 Nov 29 20:52 model_squarewave_ap.so
-rwxr-xr-x 1 owner owner 5546 Nov 29 20:52 model_trnglwave_apf.so
-rwxr-xr-x 1 owner owner 5485 Nov 29 20:52 model_trnglwave_ap.so
-rwxr-xr-x 1 owner owner 5088 Nov 29 20:52 model_zero.so
-rwxr-xr-x 1 owner owner 8004 Nov 29 21:01 module_test_lib.py
-rw-r--r-- 1 owner owner 6312 Nov 30 14:40 module_test_lib.pyc
-rwxr-xr-x 1 owner owner 4947 Nov 29 21:01 @move.to.series.dirs
-rwxr-xr-x 1 owner owner 206652 Nov 29 20:51 mpeg_encode
-rwxr-xr-x 1 owner owner 6496 Nov 29 21:01 mri_dicom_stuff.h
-rwxr-xr-x 1 owner owner 90294 Nov 29 21:01 mrilib.h
-rwxr-xr-x 1 owner owner 3434886 Nov 29 20:43 mritopgm
-rwxr-xr-x 1 owner owner 2696 Nov 29 21:01 mri_warpfield.h
-rwxr-xr-x 1 owner owner 1986 Nov 29 21:01 multivector.h
-rwxr-xr-x 1 owner owner 6890 Nov 29 20:51 mycat
-rwxr-xr-x 1 owner owner 3434851 Nov 29 20:51 myget
-rwxr-xr-x 1 owner owner 11095 Nov 29 21:01 neuro_deconvolve.py
-rwxr-xr-x 1 owner owner 3435203 Nov 29 20:46 nicat
-rwxr-xr-x 1 owner owner 3439008 Nov 29 20:48 niccc
-rwxr-xr-x 1 owner owner 69232 Nov 29 21:01 nifti1.h
-rwxr-xr-x 1 owner owner 25666 Nov 29 21:01 nifti1_io.h
-rwxr-xr-x 1 owner owner 118029 Nov 29 20:47 nifti1_test
-rwxr-xr-x 1 owner owner 8385 Nov 29 21:01 nifticdf.h
-rwxr-xr-x 1 owner owner 202223 Nov 29 20:46 nifti_tool
-rwxr-xr-x 1 owner owner 3452960 Nov 29 20:48 niml_feedme
-rwxr-xr-x 1 owner owner 49354 Nov 29 21:01 niml.h
-rwxr-xr-x 1 owner owner 797 Nov 29 21:01 @NoExt
-rwxr-xr-x 1 owner owner 7876 Nov 29 21:01 @NoisySkullStrip
-rwxr-xr-x 1 owner owner 1619 Nov 29 21:01 @NoPound
-rwxr-xr-x 1 owner owner 3189 Nov 29 21:01 @np
-rwxr-xr-x 1 owner owner 3434883 Nov 29 20:43 nsize
-rwxr-xr-x 1 owner owner 19944 Nov 29 21:01 option_list.py
-rw-r--r-- 1 owner owner 15044 Nov 30 14:40 option_list.pyc
-rwxr-xr-x 1 owner owner 636 Nov 29 21:01 @parse_afni_name
-rwxr-xr-x 1 owner owner 565 Nov 29 21:01 @parse_name
-rwxr-xr-x 1 owner owner 11253274 Nov 29 21:01 ParseName
-rwxr-xr-x 1 owner owner 317923 Nov 29 20:33 paxinos_elsevier_tissue_lores+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 5076 Nov 29 20:33 paxinos_elsevier_tissue_lores+tlrc.HEAD
-rwxr-xr-x 1 owner owner 9467 Nov 29 20:52 plug_3ddot.so
-rwxr-xr-x 1 owner owner 19628 Nov 29 20:52 plug_3Ddump_V2.so
-rwxr-xr-x 1 owner owner 8459 Nov 29 20:52 plug_3ddup.so
-rwxr-xr-x 1 owner owner 446917 Nov 29 20:53 plug_3dsvm.so
-rwxr-xr-x 1 owner owner 24075 Nov 29 20:52 plug_4Ddump.so
-rwxr-xr-x 1 owner owner 24403 Nov 29 20:52 plug_afnihistory.so
-rwxr-xr-x 1 owner owner 19302 Nov 29 20:53 plug_aslA3D3.so
-rwxr-xr-x 1 owner owner 28239 Nov 29 20:52 plug_betafit.so
-rwxr-xr-x 1 owner owner 13850 Nov 29 20:52 plug_clust.so
-rwxr-xr-x 1 owner owner 6749 Nov 29 20:52 plug_compress.so
-rwxr-xr-x 1 owner owner 8651 Nov 29 20:52 plug_coorder.so
-rwxr-xr-x 1 owner owner 11543 Nov 29 20:52 plug_copy.so
-rwxr-xr-x 1 owner owner 373154 Nov 29 20:53 plug_crender.so
-rwxr-xr-x 1 owner owner 59351 Nov 29 20:52 plug_deconvolve.so
-rwxr-xr-x 1 owner owner 45070 Nov 29 20:53 plug_delay_V2.so
-rwxr-xr-x 1 owner owner 104311 Nov 29 20:52 plug_drawdset.so
-rwxr-xr-x 1 owner owner 28058 Nov 29 20:52 plug_edit.so
-rwxr-xr-x 1 owner owner 20423 Nov 29 20:53 plug_extract.so
-rwxr-xr-x 1 owner owner 16036 Nov 29 20:53 plug_fourier.so
-rwxr-xr-x 1 owner owner 9410 Nov 29 20:53 plug_hemisub.so
-rwxr-xr-x 1 owner owner 18399 Nov 29 20:52 plug_histog_multi.so
-rwxr-xr-x 1 owner owner 32771 Nov 29 20:52 plug_histog.so
-rwxr-xr-x 1 owner owner 13098 Nov 29 20:52 plug_imreg.so
-rwxr-xr-x 1 owner owner 13511 Nov 29 20:52 plug_L1fit.so
-rwxr-xr-x 1 owner owner 20026 Nov 29 20:52 plug_lsqfit.so
-rwxr-xr-x 1 owner owner 17777 Nov 29 20:52 plug_maskave.so
-rwxr-xr-x 1 owner owner 20984 Nov 29 20:53 plug_maskcalc.so
-rwxr-xr-x 1 owner owner 60485 Nov 29 20:53 plug_maxima.so
-rwxr-xr-x 1 owner owner 72383 Nov 29 20:52 plug_nlfit.so
-rwxr-xr-x 1 owner owner 34478 Nov 29 20:52 plug_notes.so
-rwxr-xr-x 1 owner owner 22417 Nov 29 20:52 plug_nth_dataset.so
-rwxr-xr-x 1 owner owner 54029 Nov 29 20:52 plug_nudge.so
-rwxr-xr-x 1 owner owner 3443823 Nov 29 20:47 plugout_drive
-rwxr-xr-x 1 owner owner 3439465 Nov 29 20:44 plugout_ijk
-rwxr-xr-x 1 owner owner 3439492 Nov 29 20:44 plugout_tt
-rwxr-xr-x 1 owner owner 3444047 Nov 29 20:43 plugout_tta
-rwxr-xr-x 1 owner owner 37831 Nov 29 20:53 plug_permtest.so
-rwxr-xr-x 1 owner owner 18348 Nov 29 20:52 plug_power.so
-rwxr-xr-x 1 owner owner 146125 Nov 29 20:52 plug_realtime.so
-rwxr-xr-x 1 owner owner 8869 Nov 29 20:52 plug_rename.so
-rwxr-xr-x 1 owner owner 4273 Nov 29 20:52 plug_render.so
-rwxr-xr-x 1 owner owner 24899 Nov 29 20:53 plug_reorder.so
-rwxr-xr-x 1 owner owner 27546 Nov 29 20:53 plug_retroicor.so
-rwxr-xr-x 1 owner owner 187812 Nov 29 20:53 plug_roiedit.so
-rwxr-xr-x 1 owner owner 15365 Nov 29 20:52 plug_roiplot.so
-rwxr-xr-x 1 owner owner 19929 Nov 29 20:52 plug_scatplot.so
-rwxr-xr-x 1 owner owner 19544 Nov 29 20:52 plug_second_dataset.so
-rwxr-xr-x 1 owner owner 8731 Nov 29 20:52 plug_stats.so
-rwxr-xr-x 1 owner owner 15797 Nov 29 20:53 plug_stavg.so
-rwxr-xr-x 1 owner owner 42441 Nov 29 20:52 plug_tag.so
-rwxr-xr-x 1 owner owner 14919 Nov 29 20:53 plug_threshold.so
-rwxr-xr-x 1 owner owner 4274 Nov 29 20:52 plug_ttget.so
-rwxr-xr-x 1 owner owner 44427 Nov 29 20:53 plug_vol2surf.so
-rwxr-xr-x 1 owner owner 24159 Nov 29 20:52 plug_volreg.so
-rwxr-xr-x 1 owner owner 28108 Nov 29 20:52 plug_wavelets.so
-rwxr-xr-x 1 owner owner 10030 Nov 29 20:52 plug_zeropad.so
-rwxr-xr-x 1 owner owner 11308903 Nov 29 21:01 prompt_user
-rwxr-xr-x 1 owner owner 1783 Nov 29 21:01 @Purify_1D
-rwxr-xr-x 1 owner owner 8289 Nov 29 21:01 python_module_test.py
-rwxr-xr-x 1 owner owner 298646 Nov 29 20:45 qdelaunay
-rwxr-xr-x 1 owner owner 302292 Nov 29 20:45 qhull
-rwxr-xr-x 1 owner owner 1909 Nov 29 21:01 quick.alpha.vals.py
-rwxr-xr-x 1 owner owner 11257559 Nov 29 21:01 quickspec
-rwxr-xr-x 1 owner owner 8523 Nov 29 21:01 @Quiet_Talkers
-rwxr-xr-x 1 owner owner 19607 Nov 29 21:01 @radial_correlate
-rwxr-xr-x 1 owner owner 292354 Nov 29 20:45 rbox
-rwxr-xr-x 1 owner owner 1511 Nov 29 21:01 rcmat.h
-rw-r--r-- 1 owner owner 2402 Nov 29 21:01 README.3dsvm.realtime
-rw-r--r-- 1 owner owner 14096 Nov 29 21:01 README.afnigui
-rw-r--r-- 1 owner owner 6080 Nov 29 21:01 README.atlas_building
-rw-r--r-- 1 owner owner 45863 Nov 29 21:01 README.attributes
-rw-r--r-- 1 owner owner 46932 Nov 29 21:01 README.bzip2
-rwxr-xr-x 1 owner owner 2194 Nov 29 20:33 README.caez_atlas_build
-rw-r--r-- 1 owner owner 476 Nov 29 21:01 README.changes
-rw-r--r-- 1 owner owner 4707 Nov 29 21:01 README.compression
-rw-r--r-- 1 owner owner 25610 Nov 29 21:01 README.copyright
-rw-r--r-- 1 owner owner 30919 Nov 29 21:01 README.driver
-rw-r--r-- 1 owner owner 173673 Nov 29 21:01 README.environment
-rw-r--r-- 1 owner owner 5657 Nov 29 21:01 README.func_types
-rw-r--r-- 1 owner owner 587 Nov 29 21:01 README.Ifile
-rw-r--r-- 1 owner owner 6451 Nov 29 21:01 README.notes
-rw-r--r-- 1 owner owner 1684 Nov 29 21:01 README.permtest
-rw-r--r-- 1 owner owner 553 Nov 29 21:01 README.plugouts
-rw-r--r-- 1 owner owner 18268 Nov 29 21:01 README.realtime
-rw-r--r-- 1 owner owner 31330 Nov 29 21:01 README.registration
-rw-r--r-- 1 owner owner 7415 Nov 29 21:01 README.render_scripts
-rw-r--r-- 1 owner owner 6842 Nov 29 21:01 README.roi
-rw-r--r-- 1 owner owner 9487 Nov 29 21:01 README.setup
-rw-r--r-- 1 owner owner 6113 Nov 29 21:01 README.volreg
-rw-r--r-- 1 owner owner 1649 Nov 29 21:01 README.web
-rw-r--r-- 1 owner owner 0 Nov 29 21:01 README.ziad
-rwxr-xr-x 1 owner owner 22443 Nov 29 21:01 realtime_receiver.py
-rwxr-xr-x 1 owner owner 12487 Nov 29 21:01 @RenamePanga
-rwxr-xr-x 1 owner owner 6826 Nov 29 21:01 @Reorder
-rwxr-xr-x 1 owner owner 69275 Nov 29 21:01 @RetinoProc
-rwxr-xr-x 1 owner owner 1010 Nov 29 21:01 @R_funclist
-rwxr-xr-x 1 owner owner 1161 Nov 29 21:01 r_idisp.h
-rwxr-xr-x 1 owner owner 4891010 Nov 29 20:40 R_io.so
-rwxr-xr-x 1 owner owner 742 Nov 29 21:01 r_misc.h
-rwxr-xr-x 1 owner owner 3434934 Nov 29 20:51 rmz
-rwxr-xr-x 1 owner owner 830 Nov 29 21:01 r_new_resam_dset.h
-rwxr-xr-x 1 owner owner 11261471 Nov 29 21:01 ROI2dataset
-rwxr-xr-x 1 owner owner 16964 Nov 29 21:01 @ROI_Corr_Mat
-rwxr-xr-x 1 owner owner 11318872 Nov 29 21:01 ROIgrow
-rwxr-xr-x 1 owner owner 3473422 Nov 29 20:46 rotcom
-rwxr-xr-x 1 owner owner 3448411 Nov 29 20:44 RSFgen
-rwxr-xr-x 1 owner owner 3446887 Nov 29 20:46 rtfeedme
-rwxr-xr-x 1 owner owner 11261647 Nov 29 21:01 SampBias
-rwxr-xr-x 1 owner owner 11267819 Nov 29 21:01 ScaleToMap
-rwxr-xr-x 1 owner owner 10283 Nov 29 21:01 @ScaleVolume
-rwxr-xr-x 1 owner owner 305 Nov 29 20:33 scan_niml_vals.csh
-rwxr-xr-x 1 owner owner 3813 Nov 29 21:01 @ScriptCheck
-rwxr-xr-x 1 owner owner 28744 Nov 29 20:46 serial_helper
-rwxr-xr-x 1 owner owner 3443924 Nov 29 20:43 sfim
-rwxr-xr-x 1 owner owner 5491 Nov 29 21:01 @Shift_Volume
-rwxr-xr-x 1 owner owner 2943 Nov 29 21:01 @ShowDynamicRange
-rwxr-xr-x 1 owner owner 3439042 Nov 29 20:46 siemens_vision
-rwxr-xr-x 1 owner owner 21966 Nov 29 21:01 Signatures.R
-rwxr-xr-x 1 owner owner 27916 Nov 29 21:01 @simulate_motion
-rwxr-xr-x 1 owner owner 12546 Nov 29 21:01 slow_surf_clustsim.py
-rwxr-xr-x 1 owner owner 1063 Nov 29 21:01 smooth.R
-rwxr-xr-x 1 owner owner 11284079 Nov 29 21:01 SpharmDeco
-rwxr-xr-x 1 owner owner 6649 Nov 29 21:01 @Spharm.examples
-rwxr-xr-x 1 owner owner 11275248 Nov 29 21:01 SpharmReco
-rwxr-xr-x 1 owner owner 7612 Nov 29 20:43 sqwave
-rwxr-xr-x 1 owner owner 1128 Nov 29 21:01 @statauxcode
-rwxr-xr-x 1 owner owner 3439004 Nov 29 20:45 strblast
-rwxr-xr-x 1 owner owner 12036076 Nov 29 21:01 suma
-rwxr-xr-x 1 owner owner 46630 Nov 29 21:01 @SUMA_AlignToExperiment
-rwxr-xr-x 1 owner owner 4454 Nov 29 21:01 suma_change_spec
-rwxr-xr-x 1 owner owner 3663 Nov 29 21:01 @SUMA_FSvolToBRIK
-rwxr-xr-x 1 owner owner 16282 Nov 29 21:01 SUMA_glxdino
-rwxr-xr-x 1 owner owner 30640 Nov 29 21:01 @SUMA_Make_Spec_Caret
-rwxr-xr-x 1 owner owner 43418 Nov 29 21:01 @SUMA_Make_Spec_FS
-rwxr-xr-x 1 owner owner 20693 Nov 29 21:01 @SUMA_Make_Spec_SF
-rwxr-xr-x 1 owner owner 1196794 Nov 29 21:01 SUMA_paperplane
-rwxr-xr-x 1 owner owner 16235 Nov 29 21:01 SUMA_pixmap2eps
-rwxr-xr-x 1 owner owner 11319879 Nov 29 21:01 Surf2VolCoord
-rwxr-xr-x 1 owner owner 11288478 Nov 29 21:01 SurfaceMetrics
-rwxr-xr-x 1 owner owner 11265699 Nov 29 21:01 SurfClust
-rwxr-xr-x 1 owner owner 11260459 Nov 29 21:01 SurfDist
-rwxr-xr-x 1 owner owner 11307483 Nov 29 21:01 SurfDsetInfo
-rwxr-xr-x 1 owner owner 11313913 Nov 29 21:01 SurfExtrema
-rwxr-xr-x 1 owner owner 11325245 Nov 29 21:01 SurfFWHM
-rwxr-xr-x 1 owner owner 11309999 Nov 29 21:01 SurfInfo
-rwxr-xr-x 1 owner owner 11335258 Nov 29 21:01 SurfMeasures
-rwxr-xr-x 1 owner owner 11721032 Nov 29 21:01 SurfMesh
-rwxr-xr-x 1 owner owner 11268881 Nov 29 21:01 SurfPatch
-rwxr-xr-x 1 owner owner 11261872 Nov 29 21:01 SurfQual
-rwxr-xr-x 1 owner owner 11318969 Nov 29 21:01 SurfRetinoMap
-rwxr-xr-x 1 owner owner 11323055 Nov 29 21:01 SurfSmooth
-rwxr-xr-x 1 owner owner 11984 Nov 29 21:01 @SurfSmooth.HEAT_07.examples
-rwxr-xr-x 1 owner owner 11330294 Nov 29 21:01 SurfToSurf
-rwxr-xr-x 1 owner owner 10077 Nov 29 21:01 @T1scale
-rwxr-xr-x 1 owner owner 1938 Nov 29 21:01 tagset.h
-rwxr-xr-x 1 owner owner 3444177 Nov 29 20:43 tfim
-rwxr-xr-x 1 owner owner 6453 Nov 29 21:01 thd_atlas.h
-rwxr-xr-x 1 owner owner 3010 Nov 29 21:01 thd_compress.h
-rwxr-xr-x 1 owner owner 5926 Nov 29 21:01 thd_iochan.h
-rwxr-xr-x 1 owner owner 1678 Nov 29 21:01 thd_maker.h
-rwxr-xr-x 1 owner owner 1052 Nov 29 21:01 thd_ttatlas_CA_EZ.h
-rwxr-xr-x 1 owner owner 28648 Nov 29 21:01 thd_ttatlas_query.h
-rwxr-xr-x 1 owner owner 1106 Nov 29 21:01 @TimeDiff
-rwxr-xr-x 1 owner owner 64032 Nov 29 21:01 timing_tool.py
-rwxr-xr-x 1 owner owner 6070158 Nov 29 20:43 to3d
-rwxr-xr-x 1 owner owner 3729 Nov 29 21:01 @toMNI_Awarp
-rwxr-xr-x 1 owner owner 16674 Nov 29 21:01 @toMNI_Qwarpar
-rwxr-xr-x 1 owner owner 2004 Nov 29 21:01 @ToRAI
-rwxr-xr-x 1 owner owner 377624 Nov 29 20:33 TTatlas+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 40896 Nov 29 20:33 TTatlas+tlrc.HEAD
-rwxr-xr-x 1 owner owner 794290 Nov 29 20:33 TT_avg152T1+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4932 Nov 29 20:33 TT_avg152T1+tlrc.HEAD
-rwxr-xr-x 1 owner owner 781798 Nov 29 20:33 TT_avg152T2+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 5440 Nov 29 20:33 TT_avg152T2+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1356732 Nov 29 20:33 TT_caez_colin27_T1_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8799 Nov 29 20:33 TT_caez_colin27_T1_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2928274 Nov 29 20:33 TT_caez_gw_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8473 Nov 29 20:33 TT_caez_gw_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 151399 Nov 29 20:33 TT_caez_lr_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8585 Nov 29 20:33 TT_caez_lr_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 230450 Nov 29 20:33 TT_caez_ml_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 23852 Nov 29 20:33 TT_caez_ml_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 197143 Nov 29 20:33 TT_caez_mpm_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 17687 Nov 29 20:33 TT_caez_mpm_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2953181 Nov 29 20:33 TT_caez_pmaps_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 23949 Nov 29 20:33 TT_caez_pmaps_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 138445 Nov 29 20:33 TT_desai_dd_mpm+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 35035 Nov 29 20:33 TT_desai_dd_mpm+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3519331 Nov 29 20:33 TT_desai_ddpmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 214682 Nov 29 20:33 TT_desai_ddpmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 131991 Nov 29 20:33 TT_desai_dk_mpm+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 21386 Nov 29 20:33 TT_desai_dk_mpm+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2419046 Nov 29 20:33 TT_desai_dkpmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 128396 Nov 29 20:33 TT_desai_dkpmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1568559 Nov 29 20:33 TT_desai_fspmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 112365 Nov 29 20:33 TT_desai_fspmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 791958 Nov 29 20:33 TT_EPI+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4897 Nov 29 20:33 TT_EPI+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2184281 Nov 29 20:33 TT_icbm452+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8730 Nov 29 20:33 TT_icbm452+tlrc.HEAD
-rwxr-xr-x 1 owner owner 701987 Nov 29 20:33 TT_N27_CA_EZ_MPM+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 12387 Nov 29 20:33 TT_N27_CA_EZ_MPM+tlrc.HEAD
-rwxr-xr-x 1 owner owner 552746 Nov 29 20:33 TT_N27_CA_EZ_PMaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18436 Nov 29 20:33 TT_N27_CA_EZ_PMaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 59999 Nov 29 20:33 TT_N27_EZ_LR+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11839 Nov 29 20:33 TT_N27_EZ_LR+tlrc.HEAD
-rwxr-xr-x 1 owner owner 114420 Nov 29 20:33 TT_N27_EZ_ML+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 15625 Nov 29 20:33 TT_N27_EZ_ML+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1353925 Nov 29 20:33 TT_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11447 Nov 29 20:33 TT_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 9891 Nov 29 21:01 uber_align_test.py
-rwxr-xr-x 1 owner owner 10798 Nov 29 21:01 uber_proc.py
-rwxr-xr-x 1 owner owner 10002 Nov 29 21:01 uber_skel.py
-rwxr-xr-x 1 owner owner 19585 Nov 29 21:01 uber_subject.py
-rwxr-xr-x 1 owner owner 12252 Nov 29 21:01 uber_ttest.py
-rwxr-xr-x 1 owner owner 45044 Nov 29 21:01 ui_xmat.py
-rw-r--r-- 1 owner owner 4784 Nov 29 20:33 UNC_infant_CustomAtlases.niml
-rwxr-xr-x 1 owner owner 6186 Nov 29 21:01 @UpdateAfni
-rwxr-xr-x 1 owner owner 14894 Nov 29 21:01 @update.afni.binaries
-rwxr-xr-x 1 owner owner 34890 Nov 29 21:01 vecmat.h
-rwxr-xr-x 1 owner owner 3578702 Nov 29 20:45 Vecwarp
-rwxr-xr-x 1 owner owner 6508 Nov 29 21:01 vol2surf.h
-rwxr-xr-x 1 owner owner 3150 Nov 29 21:01 @VolCenter
-rwxr-xr-x 1 owner owner 25376 Nov 29 21:01 volpack.h
-rwxr-xr-x 1 owner owner 3453741 Nov 29 20:43 waver
-rwxr-xr-x 1 owner owner 3912691 Nov 29 20:47 whereami
-rwxr-xr-x 1 owner owner 17987 Nov 29 20:51 whirlgif
-rwxr-xr-x 1 owner owner 453 Nov 29 21:01 xmat_tool.py
-rwxr-xr-x 1 owner owner 5943491 Nov 29 20:51 Xphace
-rwxr-xr-x 1 owner owner 3056 Nov 29 21:01 znzlib.h
ubuntu:~>
And I don't know if this is all of it. Is it supposed to be this long?
software-installation
edited Mar 14 '14 at 21:45
Braiam
52.3k20138223
asked Nov 30 '13 at 20:39
SarahSarah
1315
bumped to the homepage by Community♦ 51 mins ago
This question has answers that may be good or bad; the system has marked it active so that they can be reviewed.
What is the output ofls -l /home/owner/abin?
– Braiam
Dec 1 '13 at 1:44
add a comment |
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These are the instructions given to me for installing AFNI, yet when I completed them, it still tells me 'command not found' for the 'afni' command.
sudo yum install libXp tcsh
sudo yum install PyQt4 R
(This was not correct, but I was able to get it to work with this):
sudo apt-get install libxp6 tcsh
sudo apt-get install python-qt4 r-base
Then:
cd
mkdir abin
Then it says to choose one of these binaries. I wasn't sure which one to choose, but I chose #3:
- linux_openmp : for multi-CPU systems, (needs libgomp)
- linux_openmp_64 : 64-bit version of the same
- linux_xorg7 : otherwise current linux package
- linux_xorg7_64 : 64-bit version of the same
Then:
set package = linux_xorg7
wget http://afni.nimh.nih.gov/pub/dist/tgz/$package.tgz
tar xvfz $package.tgz
mv $package/* abin
rmdir $package
and finally, add the AFNI package directory ~/abin to your path:
echo 'set path = ( $path ~/abin )' >> ~/.cshrc
Then it said to log out and log back in so the programs are recognized in the path, and then to try these commands upon login:
afni
suma
uber_subject.py
Only the last one worked. The others said 'command not found'.
What went wrong?
When I do 'echo $path' it shows this:
/usr/lib/lightdm/lightdm /usr/local/sbin /usr/local/bin /usr/sbin /usr/bin /sbin /bin /usr/games /usr/local/games /home/owner/abin /home/owner/abin
The output of ls -l /home/owner/abin is:
-rwxr-xr-x 1 owner owner 2134 Nov 29 21:01 @Install_AfniRetinoDemo
-rwxr-xr-x 1 owner owner 1892 Nov 29 21:01 @Install_FATCAT_DEMO
-rwxr-xr-x 1 owner owner 3465 Nov 29 21:01 @Install_InstaCorr_Demo
-rwxr-xr-x 1 owner owner 1683 Nov 29 21:01 @Install_MEICA_Demo
-rwxr-xr-x 1 owner owner 5269 Nov 29 21:01 @Install_RSFMRI_Motion_Group_Demo
-rwxr-xr-x 1 owner owner 2609 Nov 29 21:01 @Install_TSrestMovieDemo
-rwxr-xr-x 1 owner owner 902 Nov 29 21:01 @isOblique
-rwxr-xr-x 1 owner owner 3864 Nov 29 21:01 @IsoMasks
-rwxr-xr-x 1 owner owner 11329870 Nov 29 21:01 IsoSurface
-rwxr-xr-x 1 owner owner 3521 Nov 29 21:01 killer.h
-rwxr-xr-x 1 owner owner 18132 Nov 29 21:01 Level2.R
-rwxr-xr-x 1 owner owner 101340 Nov 29 21:01 lib_afni1D.py
-rw-r--r-- 1 owner owner 221272 Nov 29 21:01 libcoxplot.a
-rw-r--r-- 1 owner owner 220774 Nov 29 21:01 libf2c.a
-rw-r--r-- 1 owner owner 18582 Nov 29 20:53 libGLws.a
-rw-r--r-- 1 owner owner 1299298 Nov 29 21:00 libgts.a
-rwxr-xr-x 1 owner owner 11671 Nov 29 21:01 lib_matplot.py
-rw-r--r-- 1 owner owner 8400460 Nov 29 21:01 libmri.a
-rw-r--r-- 1 owner owner 750488 Nov 29 21:01 libmrix.a
-rwxr-xr-x 1 owner owner 67662 Nov 29 21:01 lib_qt_gui.py
-rw-r--r-- 1 owner owner 61316 Nov 30 14:40 lib_qt_gui.pyc
-rwxr-xr-x 1 owner owner 17868 Nov 29 21:01 lib_realtime.py
-rwxr-xr-x 1 owner owner 3929 Nov 29 21:01 lib_RR_plot.py
-rwxr-xr-x 1 owner owner 55020 Nov 29 21:01 lib_subjects.py
-rw-r--r-- 1 owner owner 46258 Nov 30 14:40 lib_subjects.pyc
-rw-r--r-- 1 owner owner 7842396 Nov 29 20:57 libSUMA.a
-rwxr-xr-x 1 owner owner 29947 Nov 29 21:01 lib_surf_clustsim.py
-rw-r--r-- 1 owner owner 8194 Nov 29 21:01 lib_system_check.py
-rwxr-xr-x 1 owner owner 10148 Nov 29 21:01 lib_textdata.py
-rw-r--r-- 1 owner owner 9272 Nov 30 14:40 lib_textdata.pyc
-rwxr-xr-x 1 owner owner 33042 Nov 29 21:01 lib_timing.py
-rwxr-xr-x 1 owner owner 31904 Nov 29 21:01 lib_uber_align.py
-rwxr-xr-x 1 owner owner 23453 Nov 29 21:01 lib_uber_skel.py
-rwxr-xr-x 1 owner owner 66434 Nov 29 21:01 lib_uber_subject.py
-rw-r--r-- 1 owner owner 55296 Nov 30 14:40 lib_uber_subject.pyc
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-rwxr-xr-x 1 owner owner 23949 Nov 29 20:33 TT_caez_pmaps_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 138445 Nov 29 20:33 TT_desai_dd_mpm+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 35035 Nov 29 20:33 TT_desai_dd_mpm+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3519331 Nov 29 20:33 TT_desai_ddpmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 214682 Nov 29 20:33 TT_desai_ddpmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 131991 Nov 29 20:33 TT_desai_dk_mpm+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 21386 Nov 29 20:33 TT_desai_dk_mpm+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2419046 Nov 29 20:33 TT_desai_dkpmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 128396 Nov 29 20:33 TT_desai_dkpmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1568559 Nov 29 20:33 TT_desai_fspmaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 112365 Nov 29 20:33 TT_desai_fspmaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 791958 Nov 29 20:33 TT_EPI+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4897 Nov 29 20:33 TT_EPI+tlrc.HEAD
-rwxr-xr-x 1 owner owner 2184281 Nov 29 20:33 TT_icbm452+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8730 Nov 29 20:33 TT_icbm452+tlrc.HEAD
-rwxr-xr-x 1 owner owner 701987 Nov 29 20:33 TT_N27_CA_EZ_MPM+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 12387 Nov 29 20:33 TT_N27_CA_EZ_MPM+tlrc.HEAD
-rwxr-xr-x 1 owner owner 552746 Nov 29 20:33 TT_N27_CA_EZ_PMaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18436 Nov 29 20:33 TT_N27_CA_EZ_PMaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 59999 Nov 29 20:33 TT_N27_EZ_LR+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11839 Nov 29 20:33 TT_N27_EZ_LR+tlrc.HEAD
-rwxr-xr-x 1 owner owner 114420 Nov 29 20:33 TT_N27_EZ_ML+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 15625 Nov 29 20:33 TT_N27_EZ_ML+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1353925 Nov 29 20:33 TT_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11447 Nov 29 20:33 TT_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 9891 Nov 29 21:01 uber_align_test.py
-rwxr-xr-x 1 owner owner 10798 Nov 29 21:01 uber_proc.py
-rwxr-xr-x 1 owner owner 10002 Nov 29 21:01 uber_skel.py
-rwxr-xr-x 1 owner owner 19585 Nov 29 21:01 uber_subject.py
-rwxr-xr-x 1 owner owner 12252 Nov 29 21:01 uber_ttest.py
-rwxr-xr-x 1 owner owner 45044 Nov 29 21:01 ui_xmat.py
-rw-r--r-- 1 owner owner 4784 Nov 29 20:33 UNC_infant_CustomAtlases.niml
-rwxr-xr-x 1 owner owner 6186 Nov 29 21:01 @UpdateAfni
-rwxr-xr-x 1 owner owner 14894 Nov 29 21:01 @update.afni.binaries
-rwxr-xr-x 1 owner owner 34890 Nov 29 21:01 vecmat.h
-rwxr-xr-x 1 owner owner 3578702 Nov 29 20:45 Vecwarp
-rwxr-xr-x 1 owner owner 6508 Nov 29 21:01 vol2surf.h
-rwxr-xr-x 1 owner owner 3150 Nov 29 21:01 @VolCenter
-rwxr-xr-x 1 owner owner 25376 Nov 29 21:01 volpack.h
-rwxr-xr-x 1 owner owner 3453741 Nov 29 20:43 waver
-rwxr-xr-x 1 owner owner 3912691 Nov 29 20:47 whereami
-rwxr-xr-x 1 owner owner 17987 Nov 29 20:51 whirlgif
-rwxr-xr-x 1 owner owner 453 Nov 29 21:01 xmat_tool.py
-rwxr-xr-x 1 owner owner 5943491 Nov 29 20:51 Xphace
-rwxr-xr-x 1 owner owner 3056 Nov 29 21:01 znzlib.h
ubuntu:~>
And I don't know if this is all of it. Is it supposed to be this long?
software-installation
edited Mar 14 '14 at 21:45
Braiam
52.3k20138223
asked Nov 30 '13 at 20:39
SarahSarah
1315
These are the instructions given to me for installing AFNI, yet when I completed them, it still tells me 'command not found' for the 'afni' command.
sudo yum install libXp tcsh
sudo yum install PyQt4 R
(This was not correct, but I was able to get it to work with this):
sudo apt-get install libxp6 tcsh
sudo apt-get install python-qt4 r-base
Then:
cd
mkdir abin
Then it says to choose one of these binaries. I wasn't sure which one to choose, but I chose #3:
- linux_openmp : for multi-CPU systems, (needs libgomp)
- linux_openmp_64 : 64-bit version of the same
- linux_xorg7 : otherwise current linux package
- linux_xorg7_64 : 64-bit version of the same
Then:
set package = linux_xorg7
wget http://afni.nimh.nih.gov/pub/dist/tgz/$package.tgz
tar xvfz $package.tgz
mv $package/* abin
rmdir $package
and finally, add the AFNI package directory ~/abin to your path:
echo 'set path = ( $path ~/abin )' >> ~/.cshrc
Then it said to log out and log back in so the programs are recognized in the path, and then to try these commands upon login:
afni
suma
uber_subject.py
Only the last one worked. The others said 'command not found'.
What went wrong?
When I do 'echo $path' it shows this:
/usr/lib/lightdm/lightdm /usr/local/sbin /usr/local/bin /usr/sbin /usr/bin /sbin /bin /usr/games /usr/local/games /home/owner/abin /home/owner/abin
The output of ls -l /home/owner/abin is:
-rwxr-xr-x 1 owner owner 2134 Nov 29 21:01 @Install_AfniRetinoDemo
-rwxr-xr-x 1 owner owner 1892 Nov 29 21:01 @Install_FATCAT_DEMO
-rwxr-xr-x 1 owner owner 3465 Nov 29 21:01 @Install_InstaCorr_Demo
-rwxr-xr-x 1 owner owner 1683 Nov 29 21:01 @Install_MEICA_Demo
-rwxr-xr-x 1 owner owner 5269 Nov 29 21:01 @Install_RSFMRI_Motion_Group_Demo
-rwxr-xr-x 1 owner owner 2609 Nov 29 21:01 @Install_TSrestMovieDemo
-rwxr-xr-x 1 owner owner 902 Nov 29 21:01 @isOblique
-rwxr-xr-x 1 owner owner 3864 Nov 29 21:01 @IsoMasks
-rwxr-xr-x 1 owner owner 11329870 Nov 29 21:01 IsoSurface
-rwxr-xr-x 1 owner owner 3521 Nov 29 21:01 killer.h
-rwxr-xr-x 1 owner owner 18132 Nov 29 21:01 Level2.R
-rwxr-xr-x 1 owner owner 101340 Nov 29 21:01 lib_afni1D.py
-rw-r--r-- 1 owner owner 221272 Nov 29 21:01 libcoxplot.a
-rw-r--r-- 1 owner owner 220774 Nov 29 21:01 libf2c.a
-rw-r--r-- 1 owner owner 18582 Nov 29 20:53 libGLws.a
-rw-r--r-- 1 owner owner 1299298 Nov 29 21:00 libgts.a
-rwxr-xr-x 1 owner owner 11671 Nov 29 21:01 lib_matplot.py
-rw-r--r-- 1 owner owner 8400460 Nov 29 21:01 libmri.a
-rw-r--r-- 1 owner owner 750488 Nov 29 21:01 libmrix.a
-rwxr-xr-x 1 owner owner 67662 Nov 29 21:01 lib_qt_gui.py
-rw-r--r-- 1 owner owner 61316 Nov 30 14:40 lib_qt_gui.pyc
-rwxr-xr-x 1 owner owner 17868 Nov 29 21:01 lib_realtime.py
-rwxr-xr-x 1 owner owner 3929 Nov 29 21:01 lib_RR_plot.py
-rwxr-xr-x 1 owner owner 55020 Nov 29 21:01 lib_subjects.py
-rw-r--r-- 1 owner owner 46258 Nov 30 14:40 lib_subjects.pyc
-rw-r--r-- 1 owner owner 7842396 Nov 29 20:57 libSUMA.a
-rwxr-xr-x 1 owner owner 29947 Nov 29 21:01 lib_surf_clustsim.py
-rw-r--r-- 1 owner owner 8194 Nov 29 21:01 lib_system_check.py
-rwxr-xr-x 1 owner owner 10148 Nov 29 21:01 lib_textdata.py
-rw-r--r-- 1 owner owner 9272 Nov 30 14:40 lib_textdata.pyc
-rwxr-xr-x 1 owner owner 33042 Nov 29 21:01 lib_timing.py
-rwxr-xr-x 1 owner owner 31904 Nov 29 21:01 lib_uber_align.py
-rwxr-xr-x 1 owner owner 23453 Nov 29 21:01 lib_uber_skel.py
-rwxr-xr-x 1 owner owner 66434 Nov 29 21:01 lib_uber_subject.py
-rw-r--r-- 1 owner owner 55296 Nov 30 14:40 lib_uber_subject.pyc
-rwxr-xr-x 1 owner owner 23340 Nov 29 21:01 lib_uber_ttest.py
-rw-r--r-- 1 owner owner 258384 Nov 29 21:01 libvolpack.a
-rwxr-xr-x 1 owner owner 4517 Nov 29 21:01 lib_wx.py
-rwxr-xr-x 1 owner owner 2432 Nov 29 21:01 list_struct.h
-rwxr-xr-x 1 owner owner 23775 Nov 29 21:01 lpc_align.py
-rwxr-xr-x 1 owner owner 16378 Nov 29 21:01 machdep.h
-rwxr-xr-x 1 owner owner 11268219 Nov 29 21:01 MakeColorMap
-rwxr-xr-x 1 owner owner 33562 Nov 29 21:01 @MakeLabelTable
-rwxr-xr-x 1 owner owner 8745 Nov 29 21:01 @make_plug_diff
-rwxr-xr-x 1 owner owner 4141 Nov 29 21:01 make_pq_script.py
-rwxr-xr-x 1 owner owner 91329 Nov 29 21:01 make_random_timing.py
-rwxr-xr-x 1 owner owner 15388 Nov 29 21:01 @make_stim_file
-rwxr-xr-x 1 owner owner 11915 Nov 29 21:01 make_stim_times.py
-rwxr-xr-x 1 owner owner 11282021 Nov 29 21:01 MapIcosahedron
-rwxr-xr-x 1 owner owner 3496097 Nov 29 20:52 map_TrackID
-rwxr-xr-x 1 owner owner 9080 Nov 29 20:46 mayo_analyze
-rwxr-xr-x 1 owner owner 3975 Nov 29 21:01 mcw_glob.h
-rwxr-xr-x 1 owner owner 3483 Nov 29 21:01 mcw_malloc.h
drwxr-xr-x 4 owner owner 4096 Nov 29 20:33 meica.libs
-rwxr-xr-x 1 owner owner 26764 Nov 29 20:33 meica.py
-rwxr-xr-x 1 owner owner 1088640 Nov 29 20:33 mgh_wh_template+tlrc.BRIK
-rwxr-xr-x 1 owner owner 3246 Nov 29 20:33 mgh_wh_template+tlrc.HEAD
-rwxr-xr-x 1 owner owner 141 Nov 29 21:01 misc_math.h
-rw-r--r-- 1 owner owner 6244968 Nov 29 20:33 MNI152_1mm_uni+tlrc.BRIK.gz
-rw-r--r-- 1 owner owner 4686 Nov 29 20:33 MNI152_1mm_uni+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNIa_caez_colin27_T1_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2309 Nov 29 20:33 MNIa_caez_colin27_T1_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3657483 Nov 29 20:33 MNIa_caez_gw_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2658 Nov 29 20:33 MNIa_caez_gw_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 166760 Nov 29 20:33 MNIa_caez_lr_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2771 Nov 29 20:33 MNIa_caez_lr_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 270372 Nov 29 20:33 MNIa_caez_ml_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18038 Nov 29 20:33 MNIa_caez_ml_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 238153 Nov 29 20:33 MNIa_caez_mpm_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11872 Nov 29 20:33 MNIa_caez_mpm_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNIa_caez_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2309 Nov 29 20:33 MNIa_caez_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 3240810 Nov 29 20:33 MNIa_caez_pmaps_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18134 Nov 29 20:33 MNIa_caez_pmaps_18+tlrc.HEAD
-rwxr-xr-x 1 owner owner 861626 Nov 29 20:33 MNI_avg152T2+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4983 Nov 29 20:33 MNI_avg152T2+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1726099 Nov 29 20:33 MNI_caez_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 2764 Nov 29 20:33 MNI_caez_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 266078 Nov 29 20:33 MNI_EPI+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4631 Nov 29 20:33 MNI_EPI+tlrc.HEAD
-rwxr-xr-x 1 owner owner 5545 Nov 29 20:52 model_beta.so
-rwxr-xr-x 1 owner owner 5160 Nov 29 20:52 model_constant.so
-rwxr-xr-x 1 owner owner 13916 Nov 29 20:52 model_conv_cosine4.so
-rwxr-xr-x 1 owner owner 15035 Nov 29 20:52 model_conv_diffgamma.so
-rwxr-xr-x 1 owner owner 8883 Nov 29 20:52 model_convgamma2a.so
-rwxr-xr-x 1 owner owner 8183 Nov 29 20:52 model_convgamma.so
-rwxr-xr-x 1 owner owner 31047 Nov 29 20:52 model_demri_3.so
-rwxr-xr-x 1 owner owner 5416 Nov 29 20:52 model_diffexp.so
-rwxr-xr-x 1 owner owner 5262 Nov 29 20:52 model_diffusion.so
-rwxr-xr-x 1 owner owner 5598 Nov 29 20:52 model_expMEMRI3.so
-rwxr-xr-x 1 owner owner 5309 Nov 29 20:52 model_expMEMRI.so
-rwxr-xr-x 1 owner owner 9428 Nov 29 20:52 model_expr2.so
-rwxr-xr-x 1 owner owner 5248 Nov 29 20:52 model_exp.so
-rwxr-xr-x 1 owner owner 5457 Nov 29 20:52 model_gammavar.so
-rwxr-xr-x 1 owner owner 5346 Nov 29 20:52 model_linear.so
-rwxr-xr-x 1 owner owner 5450 Nov 29 20:52 model_linplusort.so
-rwxr-xr-x 1 owner owner 9364 Nov 29 20:52 model_michaelis_menton.so
-rwxr-xr-x 1 owner owner 5089 Nov 29 20:52 model_null.so
-rwxr-xr-x 1 owner owner 5289 Nov 29 20:52 model_quadratic.so
-rwxr-xr-x 1 owner owner 5686 Nov 29 20:52 model_sinewave_apf.so
-rwxr-xr-x 1 owner owner 5345 Nov 29 20:52 model_sinewave_ap.so
-rwxr-xr-x 1 owner owner 5447 Nov 29 20:52 model_squarewave_apf.so
-rwxr-xr-x 1 owner owner 5382 Nov 29 20:52 model_squarewave_ap.so
-rwxr-xr-x 1 owner owner 5546 Nov 29 20:52 model_trnglwave_apf.so
-rwxr-xr-x 1 owner owner 5485 Nov 29 20:52 model_trnglwave_ap.so
-rwxr-xr-x 1 owner owner 5088 Nov 29 20:52 model_zero.so
-rwxr-xr-x 1 owner owner 8004 Nov 29 21:01 module_test_lib.py
-rw-r--r-- 1 owner owner 6312 Nov 30 14:40 module_test_lib.pyc
-rwxr-xr-x 1 owner owner 4947 Nov 29 21:01 @move.to.series.dirs
-rwxr-xr-x 1 owner owner 206652 Nov 29 20:51 mpeg_encode
-rwxr-xr-x 1 owner owner 6496 Nov 29 21:01 mri_dicom_stuff.h
-rwxr-xr-x 1 owner owner 90294 Nov 29 21:01 mrilib.h
-rwxr-xr-x 1 owner owner 3434886 Nov 29 20:43 mritopgm
-rwxr-xr-x 1 owner owner 2696 Nov 29 21:01 mri_warpfield.h
-rwxr-xr-x 1 owner owner 1986 Nov 29 21:01 multivector.h
-rwxr-xr-x 1 owner owner 6890 Nov 29 20:51 mycat
-rwxr-xr-x 1 owner owner 3434851 Nov 29 20:51 myget
-rwxr-xr-x 1 owner owner 11095 Nov 29 21:01 neuro_deconvolve.py
-rwxr-xr-x 1 owner owner 3435203 Nov 29 20:46 nicat
-rwxr-xr-x 1 owner owner 3439008 Nov 29 20:48 niccc
-rwxr-xr-x 1 owner owner 69232 Nov 29 21:01 nifti1.h
-rwxr-xr-x 1 owner owner 25666 Nov 29 21:01 nifti1_io.h
-rwxr-xr-x 1 owner owner 118029 Nov 29 20:47 nifti1_test
-rwxr-xr-x 1 owner owner 8385 Nov 29 21:01 nifticdf.h
-rwxr-xr-x 1 owner owner 202223 Nov 29 20:46 nifti_tool
-rwxr-xr-x 1 owner owner 3452960 Nov 29 20:48 niml_feedme
-rwxr-xr-x 1 owner owner 49354 Nov 29 21:01 niml.h
-rwxr-xr-x 1 owner owner 797 Nov 29 21:01 @NoExt
-rwxr-xr-x 1 owner owner 7876 Nov 29 21:01 @NoisySkullStrip
-rwxr-xr-x 1 owner owner 1619 Nov 29 21:01 @NoPound
-rwxr-xr-x 1 owner owner 3189 Nov 29 21:01 @np
-rwxr-xr-x 1 owner owner 3434883 Nov 29 20:43 nsize
-rwxr-xr-x 1 owner owner 19944 Nov 29 21:01 option_list.py
-rw-r--r-- 1 owner owner 15044 Nov 30 14:40 option_list.pyc
-rwxr-xr-x 1 owner owner 636 Nov 29 21:01 @parse_afni_name
-rwxr-xr-x 1 owner owner 565 Nov 29 21:01 @parse_name
-rwxr-xr-x 1 owner owner 11253274 Nov 29 21:01 ParseName
-rwxr-xr-x 1 owner owner 317923 Nov 29 20:33 paxinos_elsevier_tissue_lores+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 5076 Nov 29 20:33 paxinos_elsevier_tissue_lores+tlrc.HEAD
-rwxr-xr-x 1 owner owner 9467 Nov 29 20:52 plug_3ddot.so
-rwxr-xr-x 1 owner owner 19628 Nov 29 20:52 plug_3Ddump_V2.so
-rwxr-xr-x 1 owner owner 8459 Nov 29 20:52 plug_3ddup.so
-rwxr-xr-x 1 owner owner 446917 Nov 29 20:53 plug_3dsvm.so
-rwxr-xr-x 1 owner owner 24075 Nov 29 20:52 plug_4Ddump.so
-rwxr-xr-x 1 owner owner 24403 Nov 29 20:52 plug_afnihistory.so
-rwxr-xr-x 1 owner owner 19302 Nov 29 20:53 plug_aslA3D3.so
-rwxr-xr-x 1 owner owner 28239 Nov 29 20:52 plug_betafit.so
-rwxr-xr-x 1 owner owner 13850 Nov 29 20:52 plug_clust.so
-rwxr-xr-x 1 owner owner 6749 Nov 29 20:52 plug_compress.so
-rwxr-xr-x 1 owner owner 8651 Nov 29 20:52 plug_coorder.so
-rwxr-xr-x 1 owner owner 11543 Nov 29 20:52 plug_copy.so
-rwxr-xr-x 1 owner owner 373154 Nov 29 20:53 plug_crender.so
-rwxr-xr-x 1 owner owner 59351 Nov 29 20:52 plug_deconvolve.so
-rwxr-xr-x 1 owner owner 45070 Nov 29 20:53 plug_delay_V2.so
-rwxr-xr-x 1 owner owner 104311 Nov 29 20:52 plug_drawdset.so
-rwxr-xr-x 1 owner owner 28058 Nov 29 20:52 plug_edit.so
-rwxr-xr-x 1 owner owner 20423 Nov 29 20:53 plug_extract.so
-rwxr-xr-x 1 owner owner 16036 Nov 29 20:53 plug_fourier.so
-rwxr-xr-x 1 owner owner 9410 Nov 29 20:53 plug_hemisub.so
-rwxr-xr-x 1 owner owner 18399 Nov 29 20:52 plug_histog_multi.so
-rwxr-xr-x 1 owner owner 32771 Nov 29 20:52 plug_histog.so
-rwxr-xr-x 1 owner owner 13098 Nov 29 20:52 plug_imreg.so
-rwxr-xr-x 1 owner owner 13511 Nov 29 20:52 plug_L1fit.so
-rwxr-xr-x 1 owner owner 20026 Nov 29 20:52 plug_lsqfit.so
-rwxr-xr-x 1 owner owner 17777 Nov 29 20:52 plug_maskave.so
-rwxr-xr-x 1 owner owner 20984 Nov 29 20:53 plug_maskcalc.so
-rwxr-xr-x 1 owner owner 60485 Nov 29 20:53 plug_maxima.so
-rwxr-xr-x 1 owner owner 72383 Nov 29 20:52 plug_nlfit.so
-rwxr-xr-x 1 owner owner 34478 Nov 29 20:52 plug_notes.so
-rwxr-xr-x 1 owner owner 22417 Nov 29 20:52 plug_nth_dataset.so
-rwxr-xr-x 1 owner owner 54029 Nov 29 20:52 plug_nudge.so
-rwxr-xr-x 1 owner owner 3443823 Nov 29 20:47 plugout_drive
-rwxr-xr-x 1 owner owner 3439465 Nov 29 20:44 plugout_ijk
-rwxr-xr-x 1 owner owner 3439492 Nov 29 20:44 plugout_tt
-rwxr-xr-x 1 owner owner 3444047 Nov 29 20:43 plugout_tta
-rwxr-xr-x 1 owner owner 37831 Nov 29 20:53 plug_permtest.so
-rwxr-xr-x 1 owner owner 18348 Nov 29 20:52 plug_power.so
-rwxr-xr-x 1 owner owner 146125 Nov 29 20:52 plug_realtime.so
-rwxr-xr-x 1 owner owner 8869 Nov 29 20:52 plug_rename.so
-rwxr-xr-x 1 owner owner 4273 Nov 29 20:52 plug_render.so
-rwxr-xr-x 1 owner owner 24899 Nov 29 20:53 plug_reorder.so
-rwxr-xr-x 1 owner owner 27546 Nov 29 20:53 plug_retroicor.so
-rwxr-xr-x 1 owner owner 187812 Nov 29 20:53 plug_roiedit.so
-rwxr-xr-x 1 owner owner 15365 Nov 29 20:52 plug_roiplot.so
-rwxr-xr-x 1 owner owner 19929 Nov 29 20:52 plug_scatplot.so
-rwxr-xr-x 1 owner owner 19544 Nov 29 20:52 plug_second_dataset.so
-rwxr-xr-x 1 owner owner 8731 Nov 29 20:52 plug_stats.so
-rwxr-xr-x 1 owner owner 15797 Nov 29 20:53 plug_stavg.so
-rwxr-xr-x 1 owner owner 42441 Nov 29 20:52 plug_tag.so
-rwxr-xr-x 1 owner owner 14919 Nov 29 20:53 plug_threshold.so
-rwxr-xr-x 1 owner owner 4274 Nov 29 20:52 plug_ttget.so
-rwxr-xr-x 1 owner owner 44427 Nov 29 20:53 plug_vol2surf.so
-rwxr-xr-x 1 owner owner 24159 Nov 29 20:52 plug_volreg.so
-rwxr-xr-x 1 owner owner 28108 Nov 29 20:52 plug_wavelets.so
-rwxr-xr-x 1 owner owner 10030 Nov 29 20:52 plug_zeropad.so
-rwxr-xr-x 1 owner owner 11308903 Nov 29 21:01 prompt_user
-rwxr-xr-x 1 owner owner 1783 Nov 29 21:01 @Purify_1D
-rwxr-xr-x 1 owner owner 8289 Nov 29 21:01 python_module_test.py
-rwxr-xr-x 1 owner owner 298646 Nov 29 20:45 qdelaunay
-rwxr-xr-x 1 owner owner 302292 Nov 29 20:45 qhull
-rwxr-xr-x 1 owner owner 1909 Nov 29 21:01 quick.alpha.vals.py
-rwxr-xr-x 1 owner owner 11257559 Nov 29 21:01 quickspec
-rwxr-xr-x 1 owner owner 8523 Nov 29 21:01 @Quiet_Talkers
-rwxr-xr-x 1 owner owner 19607 Nov 29 21:01 @radial_correlate
-rwxr-xr-x 1 owner owner 292354 Nov 29 20:45 rbox
-rwxr-xr-x 1 owner owner 1511 Nov 29 21:01 rcmat.h
-rw-r--r-- 1 owner owner 2402 Nov 29 21:01 README.3dsvm.realtime
-rw-r--r-- 1 owner owner 14096 Nov 29 21:01 README.afnigui
-rw-r--r-- 1 owner owner 6080 Nov 29 21:01 README.atlas_building
-rw-r--r-- 1 owner owner 45863 Nov 29 21:01 README.attributes
-rw-r--r-- 1 owner owner 46932 Nov 29 21:01 README.bzip2
-rwxr-xr-x 1 owner owner 2194 Nov 29 20:33 README.caez_atlas_build
-rw-r--r-- 1 owner owner 476 Nov 29 21:01 README.changes
-rw-r--r-- 1 owner owner 4707 Nov 29 21:01 README.compression
-rw-r--r-- 1 owner owner 25610 Nov 29 21:01 README.copyright
-rw-r--r-- 1 owner owner 30919 Nov 29 21:01 README.driver
-rw-r--r-- 1 owner owner 173673 Nov 29 21:01 README.environment
-rw-r--r-- 1 owner owner 5657 Nov 29 21:01 README.func_types
-rw-r--r-- 1 owner owner 587 Nov 29 21:01 README.Ifile
-rw-r--r-- 1 owner owner 6451 Nov 29 21:01 README.notes
-rw-r--r-- 1 owner owner 1684 Nov 29 21:01 README.permtest
-rw-r--r-- 1 owner owner 553 Nov 29 21:01 README.plugouts
-rw-r--r-- 1 owner owner 18268 Nov 29 21:01 README.realtime
-rw-r--r-- 1 owner owner 31330 Nov 29 21:01 README.registration
-rw-r--r-- 1 owner owner 7415 Nov 29 21:01 README.render_scripts
-rw-r--r-- 1 owner owner 6842 Nov 29 21:01 README.roi
-rw-r--r-- 1 owner owner 9487 Nov 29 21:01 README.setup
-rw-r--r-- 1 owner owner 6113 Nov 29 21:01 README.volreg
-rw-r--r-- 1 owner owner 1649 Nov 29 21:01 README.web
-rw-r--r-- 1 owner owner 0 Nov 29 21:01 README.ziad
-rwxr-xr-x 1 owner owner 22443 Nov 29 21:01 realtime_receiver.py
-rwxr-xr-x 1 owner owner 12487 Nov 29 21:01 @RenamePanga
-rwxr-xr-x 1 owner owner 6826 Nov 29 21:01 @Reorder
-rwxr-xr-x 1 owner owner 69275 Nov 29 21:01 @RetinoProc
-rwxr-xr-x 1 owner owner 1010 Nov 29 21:01 @R_funclist
-rwxr-xr-x 1 owner owner 1161 Nov 29 21:01 r_idisp.h
-rwxr-xr-x 1 owner owner 4891010 Nov 29 20:40 R_io.so
-rwxr-xr-x 1 owner owner 742 Nov 29 21:01 r_misc.h
-rwxr-xr-x 1 owner owner 3434934 Nov 29 20:51 rmz
-rwxr-xr-x 1 owner owner 830 Nov 29 21:01 r_new_resam_dset.h
-rwxr-xr-x 1 owner owner 11261471 Nov 29 21:01 ROI2dataset
-rwxr-xr-x 1 owner owner 16964 Nov 29 21:01 @ROI_Corr_Mat
-rwxr-xr-x 1 owner owner 11318872 Nov 29 21:01 ROIgrow
-rwxr-xr-x 1 owner owner 3473422 Nov 29 20:46 rotcom
-rwxr-xr-x 1 owner owner 3448411 Nov 29 20:44 RSFgen
-rwxr-xr-x 1 owner owner 3446887 Nov 29 20:46 rtfeedme
-rwxr-xr-x 1 owner owner 11261647 Nov 29 21:01 SampBias
-rwxr-xr-x 1 owner owner 11267819 Nov 29 21:01 ScaleToMap
-rwxr-xr-x 1 owner owner 10283 Nov 29 21:01 @ScaleVolume
-rwxr-xr-x 1 owner owner 305 Nov 29 20:33 scan_niml_vals.csh
-rwxr-xr-x 1 owner owner 3813 Nov 29 21:01 @ScriptCheck
-rwxr-xr-x 1 owner owner 28744 Nov 29 20:46 serial_helper
-rwxr-xr-x 1 owner owner 3443924 Nov 29 20:43 sfim
-rwxr-xr-x 1 owner owner 5491 Nov 29 21:01 @Shift_Volume
-rwxr-xr-x 1 owner owner 2943 Nov 29 21:01 @ShowDynamicRange
-rwxr-xr-x 1 owner owner 3439042 Nov 29 20:46 siemens_vision
-rwxr-xr-x 1 owner owner 21966 Nov 29 21:01 Signatures.R
-rwxr-xr-x 1 owner owner 27916 Nov 29 21:01 @simulate_motion
-rwxr-xr-x 1 owner owner 12546 Nov 29 21:01 slow_surf_clustsim.py
-rwxr-xr-x 1 owner owner 1063 Nov 29 21:01 smooth.R
-rwxr-xr-x 1 owner owner 11284079 Nov 29 21:01 SpharmDeco
-rwxr-xr-x 1 owner owner 6649 Nov 29 21:01 @Spharm.examples
-rwxr-xr-x 1 owner owner 11275248 Nov 29 21:01 SpharmReco
-rwxr-xr-x 1 owner owner 7612 Nov 29 20:43 sqwave
-rwxr-xr-x 1 owner owner 1128 Nov 29 21:01 @statauxcode
-rwxr-xr-x 1 owner owner 3439004 Nov 29 20:45 strblast
-rwxr-xr-x 1 owner owner 12036076 Nov 29 21:01 suma
-rwxr-xr-x 1 owner owner 46630 Nov 29 21:01 @SUMA_AlignToExperiment
-rwxr-xr-x 1 owner owner 4454 Nov 29 21:01 suma_change_spec
-rwxr-xr-x 1 owner owner 3663 Nov 29 21:01 @SUMA_FSvolToBRIK
-rwxr-xr-x 1 owner owner 16282 Nov 29 21:01 SUMA_glxdino
-rwxr-xr-x 1 owner owner 30640 Nov 29 21:01 @SUMA_Make_Spec_Caret
-rwxr-xr-x 1 owner owner 43418 Nov 29 21:01 @SUMA_Make_Spec_FS
-rwxr-xr-x 1 owner owner 20693 Nov 29 21:01 @SUMA_Make_Spec_SF
-rwxr-xr-x 1 owner owner 1196794 Nov 29 21:01 SUMA_paperplane
-rwxr-xr-x 1 owner owner 16235 Nov 29 21:01 SUMA_pixmap2eps
-rwxr-xr-x 1 owner owner 11319879 Nov 29 21:01 Surf2VolCoord
-rwxr-xr-x 1 owner owner 11288478 Nov 29 21:01 SurfaceMetrics
-rwxr-xr-x 1 owner owner 11265699 Nov 29 21:01 SurfClust
-rwxr-xr-x 1 owner owner 11260459 Nov 29 21:01 SurfDist
-rwxr-xr-x 1 owner owner 11307483 Nov 29 21:01 SurfDsetInfo
-rwxr-xr-x 1 owner owner 11313913 Nov 29 21:01 SurfExtrema
-rwxr-xr-x 1 owner owner 11325245 Nov 29 21:01 SurfFWHM
-rwxr-xr-x 1 owner owner 11309999 Nov 29 21:01 SurfInfo
-rwxr-xr-x 1 owner owner 11335258 Nov 29 21:01 SurfMeasures
-rwxr-xr-x 1 owner owner 11721032 Nov 29 21:01 SurfMesh
-rwxr-xr-x 1 owner owner 11268881 Nov 29 21:01 SurfPatch
-rwxr-xr-x 1 owner owner 11261872 Nov 29 21:01 SurfQual
-rwxr-xr-x 1 owner owner 11318969 Nov 29 21:01 SurfRetinoMap
-rwxr-xr-x 1 owner owner 11323055 Nov 29 21:01 SurfSmooth
-rwxr-xr-x 1 owner owner 11984 Nov 29 21:01 @SurfSmooth.HEAT_07.examples
-rwxr-xr-x 1 owner owner 11330294 Nov 29 21:01 SurfToSurf
-rwxr-xr-x 1 owner owner 10077 Nov 29 21:01 @T1scale
-rwxr-xr-x 1 owner owner 1938 Nov 29 21:01 tagset.h
-rwxr-xr-x 1 owner owner 3444177 Nov 29 20:43 tfim
-rwxr-xr-x 1 owner owner 6453 Nov 29 21:01 thd_atlas.h
-rwxr-xr-x 1 owner owner 3010 Nov 29 21:01 thd_compress.h
-rwxr-xr-x 1 owner owner 5926 Nov 29 21:01 thd_iochan.h
-rwxr-xr-x 1 owner owner 1678 Nov 29 21:01 thd_maker.h
-rwxr-xr-x 1 owner owner 1052 Nov 29 21:01 thd_ttatlas_CA_EZ.h
-rwxr-xr-x 1 owner owner 28648 Nov 29 21:01 thd_ttatlas_query.h
-rwxr-xr-x 1 owner owner 1106 Nov 29 21:01 @TimeDiff
-rwxr-xr-x 1 owner owner 64032 Nov 29 21:01 timing_tool.py
-rwxr-xr-x 1 owner owner 6070158 Nov 29 20:43 to3d
-rwxr-xr-x 1 owner owner 3729 Nov 29 21:01 @toMNI_Awarp
-rwxr-xr-x 1 owner owner 16674 Nov 29 21:01 @toMNI_Qwarpar
-rwxr-xr-x 1 owner owner 2004 Nov 29 21:01 @ToRAI
-rwxr-xr-x 1 owner owner 377624 Nov 29 20:33 TTatlas+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 40896 Nov 29 20:33 TTatlas+tlrc.HEAD
-rwxr-xr-x 1 owner owner 794290 Nov 29 20:33 TT_avg152T1+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 4932 Nov 29 20:33 TT_avg152T1+tlrc.HEAD
-rwxr-xr-x 1 owner owner 781798 Nov 29 20:33 TT_avg152T2+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 5440 Nov 29 20:33 TT_avg152T2+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1356732 Nov 29 20:33 TT_caez_colin27_T1_18+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 8799 Nov 29 20:33 TT_caez_colin27_T1_18+tlrc.HEAD
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-rwxr-xr-x 1 owner owner 17687 Nov 29 20:33 TT_caez_mpm_18+tlrc.HEAD
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-rwxr-xr-x 1 owner owner 791958 Nov 29 20:33 TT_EPI+tlrc.BRIK.gz
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-rwxr-xr-x 1 owner owner 701987 Nov 29 20:33 TT_N27_CA_EZ_MPM+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 12387 Nov 29 20:33 TT_N27_CA_EZ_MPM+tlrc.HEAD
-rwxr-xr-x 1 owner owner 552746 Nov 29 20:33 TT_N27_CA_EZ_PMaps+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 18436 Nov 29 20:33 TT_N27_CA_EZ_PMaps+tlrc.HEAD
-rwxr-xr-x 1 owner owner 59999 Nov 29 20:33 TT_N27_EZ_LR+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11839 Nov 29 20:33 TT_N27_EZ_LR+tlrc.HEAD
-rwxr-xr-x 1 owner owner 114420 Nov 29 20:33 TT_N27_EZ_ML+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 15625 Nov 29 20:33 TT_N27_EZ_ML+tlrc.HEAD
-rwxr-xr-x 1 owner owner 1353925 Nov 29 20:33 TT_N27+tlrc.BRIK.gz
-rwxr-xr-x 1 owner owner 11447 Nov 29 20:33 TT_N27+tlrc.HEAD
-rwxr-xr-x 1 owner owner 9891 Nov 29 21:01 uber_align_test.py
-rwxr-xr-x 1 owner owner 10798 Nov 29 21:01 uber_proc.py
-rwxr-xr-x 1 owner owner 10002 Nov 29 21:01 uber_skel.py
-rwxr-xr-x 1 owner owner 19585 Nov 29 21:01 uber_subject.py
-rwxr-xr-x 1 owner owner 12252 Nov 29 21:01 uber_ttest.py
-rwxr-xr-x 1 owner owner 45044 Nov 29 21:01 ui_xmat.py
-rw-r--r-- 1 owner owner 4784 Nov 29 20:33 UNC_infant_CustomAtlases.niml
-rwxr-xr-x 1 owner owner 6186 Nov 29 21:01 @UpdateAfni
-rwxr-xr-x 1 owner owner 14894 Nov 29 21:01 @update.afni.binaries
-rwxr-xr-x 1 owner owner 34890 Nov 29 21:01 vecmat.h
-rwxr-xr-x 1 owner owner 3578702 Nov 29 20:45 Vecwarp
-rwxr-xr-x 1 owner owner 6508 Nov 29 21:01 vol2surf.h
-rwxr-xr-x 1 owner owner 3150 Nov 29 21:01 @VolCenter
-rwxr-xr-x 1 owner owner 25376 Nov 29 21:01 volpack.h
-rwxr-xr-x 1 owner owner 3453741 Nov 29 20:43 waver
-rwxr-xr-x 1 owner owner 3912691 Nov 29 20:47 whereami
-rwxr-xr-x 1 owner owner 17987 Nov 29 20:51 whirlgif
-rwxr-xr-x 1 owner owner 453 Nov 29 21:01 xmat_tool.py
-rwxr-xr-x 1 owner owner 5943491 Nov 29 20:51 Xphace
-rwxr-xr-x 1 owner owner 3056 Nov 29 21:01 znzlib.h
ubuntu:~>
And I don't know if this is all of it. Is it supposed to be this long?
software-installation
software-installation
edited Mar 14 '14 at 21:45
Braiam
52.3k20138223
asked Nov 30 '13 at 20:39
SarahSarah
1315
edited Mar 14 '14 at 21:45
Braiam
52.3k20138223
asked Nov 30 '13 at 20:39
SarahSarah
1315
edited Mar 14 '14 at 21:45
Braiam
52.3k20138223
edited Mar 14 '14 at 21:45
Braiam
52.3k20138223
edited Mar 14 '14 at 21:45
Braiam
52.3k20138223
52.3k20138223
asked Nov 30 '13 at 20:39
SarahSarah
1315
asked Nov 30 '13 at 20:39
SarahSarah
1315
asked Nov 30 '13 at 20:39
SarahSarah
1315
1315
bumped to the homepage by Community♦ 51 mins ago
This question has answers that may be good or bad; the system has marked it active so that they can be reviewed.
bumped to the homepage by Community♦ 51 mins ago
This question has answers that may be good or bad; the system has marked it active so that they can be reviewed.
What is the output ofls -l /home/owner/abin?
– Braiam
Dec 1 '13 at 1:44
add a comment |
What is the output ofls -l /home/owner/abin?
– Braiam
Dec 1 '13 at 1:44
What is the output of
ls -l /home/owner/abin?– Braiam
Dec 1 '13 at 1:44
What is the output of
ls -l /home/owner/abin?– Braiam
Dec 1 '13 at 1:44
add a comment |
1 Answer
1
active
oldest
votes
0
They really want to make your life difficult. You must use tcsh to use the program. Type tcsh then write afni and suma. You must do this each time.
set path = ($path /home/owner/abin)
tcsh
afni
suma
answered Nov 30 '13 at 21:02
BraiamBraiam
52.3k20138223
still says command not found
– Sarah
Nov 30 '13 at 21:44
add a comment |
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1 Answer
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oldest
votes
1 Answer
1
active
oldest
votes
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oldest
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votes
0
They really want to make your life difficult. You must use tcsh to use the program. Type tcsh then write afni and suma. You must do this each time.
set path = ($path /home/owner/abin)
tcsh
afni
suma
answered Nov 30 '13 at 21:02
BraiamBraiam
52.3k20138223
still says command not found
– Sarah
Nov 30 '13 at 21:44
add a comment |
0
They really want to make your life difficult. You must use tcsh to use the program. Type tcsh then write afni and suma. You must do this each time.
set path = ($path /home/owner/abin)
tcsh
afni
suma
answered Nov 30 '13 at 21:02
BraiamBraiam
52.3k20138223
still says command not found
– Sarah
Nov 30 '13 at 21:44
add a comment |
0
0
0
They really want to make your life difficult. You must use tcsh to use the program. Type tcsh then write afni and suma. You must do this each time.
set path = ($path /home/owner/abin)
tcsh
afni
suma
answered Nov 30 '13 at 21:02
BraiamBraiam
52.3k20138223
They really want to make your life difficult. You must use tcsh to use the program. Type tcsh then write afni and suma. You must do this each time.
set path = ($path /home/owner/abin)
tcsh
afni
suma
answered Nov 30 '13 at 21:02
BraiamBraiam
52.3k20138223
edited Mar 14 '14 at 21:47
answered Nov 30 '13 at 21:02
BraiamBraiam
52.3k20138223
answered Nov 30 '13 at 21:02
BraiamBraiam
52.3k20138223
answered Nov 30 '13 at 21:02
BraiamBraiam
52.3k20138223
52.3k20138223
still says command not found
– Sarah
Nov 30 '13 at 21:44
add a comment |
still says command not found
– Sarah
Nov 30 '13 at 21:44
still says command not found
– Sarah
Nov 30 '13 at 21:44
still says command not found
– Sarah
Nov 30 '13 at 21:44
add a comment |
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What is the output of
ls -l /home/owner/abin?– Braiam
Dec 1 '13 at 1:44